BacMap

Definition	Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome.
Accession	NC_003919
Length	5,175,554

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The map label for this gene is vdlC [H]

Identifier: 21241310

GI number: 21241310

Start: 629109

End: 629939

Strand: Direct

Name: vdlC [H]

Synonym: XAC0539

Alternate gene names: 21241310

Gene position: 629109-629939 (Clockwise)

Preceding gene: 21241309

Following gene: 21241312

Centisome position: 12.16

GC content: 63.06

Gene sequence:

>831_bases
ATGTTCGTCAAAGGAAAGAAAACCGCCTTGGTCACCGGTGCGTCGTCGGGCATGGGCAAAGCCATTGCGCACCGTCTCAT
CCAGGATGGCTATCAGGTCTACGTAGCGGCGCGCAACGTCGACAGGATGGCGGATTTGGCCCTGCTGGGCGCACACCCCC
TGTGCATGGACGTCTCCAGGGACGACGACATCGTCGCCGGCGTCAACACGATCCTGGCCCAGACGGGCGGCGTGGATGTG
TTGGTCAACAATGCAGGCTTTGGACTGTACGGGCCGATCGAGGAAATCGGGATCCACGAAGCGCGCTACCAGTTCGAAGT
CAATCTGTTCGGTGCCGCCCGGCTCACCCAACTGCTGCTGCCCGCGATGCGCTCCAAGCGCGCCGGGCATATCGTCAACA
TCACCTCGATGGGCGGCAAGATGTACAGCATCCTGGGTGCGTGGTACCACGCGACCAAACATGCGCTGGAAGGCTGGTCT
GATTGTTTGCGCCTGGAGGTCGCCGAGTTCGGCATCAAGGTCGTGATCGTCGAACCTGGCGTGATCGAGACGGGCTTCGG
CGATGCCGCCACCGACAGCATCGCCAAGCGCTCGGCCAGCGGCCCCTATGGCCGGCTGGTGCAGATGGTGACCAAATCGA
TCGACACCACGTACGGACATGGCAAGGGCAGCGATCCGCGCGTGATCGCAGACGTGGTCTCCAGGGCGGTGGCCAGCAAC
AACCCGCGTACGCGCTATGCGGCCGGCAAGTTCGCCAGGATGCTGATCCGCATGCGCGTCTGGCTCGGCGATCGCATGTT
CGACCGCATCATCCTGAGCCAGACGCGCTGA

Upstream 100 bases:

>100_bases
CGATGCTTGGCGCGAAATGTCAGCACTCTGGCGCCGATTGCAAGTCGAGTCTGCTCGCGCATCCGGAGAATGGACCTCAT
CCATTCAATCGAGGTCTCAC

Downstream 100 bases:

>100_bases
GAACGGAGCTGGCTTGCGCTGATCAAATGCCCAGTCATGATGTTAAGGGGAATGCGATTTATTGCAGTGGGCTGGCAGTG
GCTCGCAAGACACCCGGCGC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MFVKGKKTALVTGASSGMGKAIAHRLIQDGYQVYVAARNVDRMADLALLGAHPLCMDVSRDDDIVAGVNTILAQTGGVDV
LVNNAGFGLYGPIEEIGIHEARYQFEVNLFGAARLTQLLLPAMRSKRAGHIVNITSMGGKMYSILGAWYHATKHALEGWS
DCLRLEVAEFGIKVVIVEPGVIETGFGDAATDSIAKRSASGPYGRLVQMVTKSIDTTYGHGKGSDPRVIADVVSRAVASN
NPRTRYAAGKFARMLIRMRVWLGDRMFDRIILSQTR

Sequences:

>Translated_276_residues
MFVKGKKTALVTGASSGMGKAIAHRLIQDGYQVYVAARNVDRMADLALLGAHPLCMDVSRDDDIVAGVNTILAQTGGVDV
LVNNAGFGLYGPIEEIGIHEARYQFEVNLFGAARLTQLLLPAMRSKRAGHIVNITSMGGKMYSILGAWYHATKHALEGWS
DCLRLEVAEFGIKVVIVEPGVIETGFGDAATDSIAKRSASGPYGRLVQMVTKSIDTTYGHGKGSDPRVIADVVSRAVASN
NPRTRYAAGKFARMLIRMRVWLGDRMFDRIILSQTR
>Mature_276_residues
MFVKGKKTALVTGASSGMGKAIAHRLIQDGYQVYVAARNVDRMADLALLGAHPLCMDVSRDDDIVAGVNTILAQTGGVDV
LVNNAGFGLYGPIEEIGIHEARYQFEVNLFGAARLTQLLLPAMRSKRAGHIVNITSMGGKMYSILGAWYHATKHALEGWS
DCLRLEVAEFGIKVVIVEPGVIETGFGDAATDSIAKRSASGPYGRLVQMVTKSIDTTYGHGKGSDPRVIADVVSRAVASN
NPRTRYAAGKFARMLIRMRVWLGDRMFDRIILSQTR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=192, Percent_Identity=36.4583333333333, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI20149619, Length=237, Percent_Identity=33.3333333333333, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI223718074, Length=270, Percent_Identity=30.3703703703704, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI44680136, Length=267, Percent_Identity=29.2134831460674, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI44680133, Length=267, Percent_Identity=29.2134831460674, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI17738292, Length=267, Percent_Identity=29.2134831460674, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI40548397, Length=270, Percent_Identity=28.8888888888889, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI214010158, Length=270, Percent_Identity=28.8888888888889, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI214010156, Length=270, Percent_Identity=28.8888888888889, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI22758144, Length=270, Percent_Identity=28.8888888888889, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI19743808, Length=296, Percent_Identity=28.7162162162162, Blast_Score=101, Evalue=9e-22,
Organism=Homo sapiens, GI22507405, Length=271, Percent_Identity=28.7822878228782, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI109715829, Length=208, Percent_Identity=31.7307692307692, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI150247226, Length=271, Percent_Identity=28.7822878228782, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI157739938, Length=189, Percent_Identity=32.2751322751323, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI4503817, Length=235, Percent_Identity=27.6595744680851, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI7706318, Length=187, Percent_Identity=30.4812834224599, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI32483357, Length=190, Percent_Identity=32.1052631578947, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI50726952, Length=280, Percent_Identity=27.1428571428571, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI119392083, Length=268, Percent_Identity=29.4776119402985, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=36.5979381443299, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI5031737, Length=194, Percent_Identity=36.5979381443299, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI40254992, Length=207, Percent_Identity=28.9855072463768, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI4504503, Length=183, Percent_Identity=30.0546448087432, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI7705925, Length=195, Percent_Identity=30.2564102564103, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI59889578, Length=164, Percent_Identity=31.0975609756098, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI142976729, Length=194, Percent_Identity=28.3505154639175, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI7705855, Length=201, Percent_Identity=26.865671641791, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI32455239, Length=214, Percent_Identity=28.9719626168224, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI5031765, Length=214, Percent_Identity=28.9719626168224, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI210032110, Length=186, Percent_Identity=29.0322580645161, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1786701, Length=267, Percent_Identity=31.4606741573034, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1787335, Length=206, Percent_Identity=37.8640776699029, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI87082100, Length=211, Percent_Identity=29.8578199052133, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787820, Length=177, Percent_Identity=31.638418079096, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI87082160, Length=187, Percent_Identity=29.4117647058824, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI2367365, Length=181, Percent_Identity=30.939226519337, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787905, Length=184, Percent_Identity=30.9782608695652, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788459, Length=186, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790717, Length=240, Percent_Identity=26.25, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786812, Length=178, Percent_Identity=29.2134831460674, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI2367175, Length=189, Percent_Identity=32.8042328042328, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17570069, Length=194, Percent_Identity=36.0824742268041, Blast_Score=102, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71997402, Length=260, Percent_Identity=30.7692307692308, Blast_Score=101, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI115534660, Length=258, Percent_Identity=26.3565891472868, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17557780, Length=277, Percent_Identity=29.6028880866426, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI71994600, Length=188, Percent_Identity=31.3829787234043, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17562908, Length=199, Percent_Identity=32.1608040201005, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17560332, Length=194, Percent_Identity=31.4432989690722, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17562904, Length=200, Percent_Identity=30, Blast_Score=88, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17538486, Length=198, Percent_Identity=29.2929292929293, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71994604, Length=190, Percent_Identity=32.1052631578947, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17565030, Length=199, Percent_Identity=29.6482412060301, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=197, Percent_Identity=29.9492385786802, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17508895, Length=193, Percent_Identity=32.6424870466321, Blast_Score=81, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17562990, Length=192, Percent_Identity=30.7291666666667, Blast_Score=81, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=197, Percent_Identity=29.9492385786802, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17560150, Length=196, Percent_Identity=31.1224489795918, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=201, Percent_Identity=27.363184079602, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193210355, Length=259, Percent_Identity=26.2548262548263, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=201, Percent_Identity=28.8557213930348, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17551412, Length=206, Percent_Identity=28.6407766990291, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=197, Percent_Identity=27.4111675126904, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=194, Percent_Identity=27.8350515463918, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17561402, Length=186, Percent_Identity=29.5698924731183, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=228, Percent_Identity=28.0701754385965, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI32563809, Length=274, Percent_Identity=22.6277372262774, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17559552, Length=199, Percent_Identity=28.643216080402, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17507613, Length=274, Percent_Identity=22.6277372262774, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71982365, Length=151, Percent_Identity=30.4635761589404, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17544670, Length=230, Percent_Identity=26.0869565217391, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17557668, Length=221, Percent_Identity=26.6968325791855, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17560676, Length=189, Percent_Identity=30.6878306878307, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17564282, Length=192, Percent_Identity=28.6458333333333, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=190, Percent_Identity=28.9473684210526, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI193203117, Length=190, Percent_Identity=28.9473684210526, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=29.7435897435897, Blast_Score=98, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6322067, Length=195, Percent_Identity=31.2820512820513, Blast_Score=84, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6320089, Length=195, Percent_Identity=30.2564102564103, Blast_Score=63, Evalue=6e-11,
Organism=Drosophila melanogaster, GI21358495, Length=247, Percent_Identity=32.3886639676113, Blast_Score=109, Evalue=2e-24,
Organism=Drosophila melanogaster, GI21357041, Length=186, Percent_Identity=33.8709677419355, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI23397609, Length=213, Percent_Identity=34.2723004694836, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI28571526, Length=186, Percent_Identity=33.8709677419355, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24643142, Length=199, Percent_Identity=33.1658291457286, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI116007236, Length=193, Percent_Identity=31.0880829015544, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24644339, Length=188, Percent_Identity=32.4468085106383, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI21355319, Length=211, Percent_Identity=32.2274881516588, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24641232, Length=210, Percent_Identity=32.3809523809524, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI116007238, Length=181, Percent_Identity=31.4917127071823, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI116007234, Length=197, Percent_Identity=33.502538071066, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24651139, Length=195, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI28571387, Length=196, Percent_Identity=30.6122448979592, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24640442, Length=187, Percent_Identity=31.0160427807487, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24639444, Length=210, Percent_Identity=30.952380952381, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24580925, Length=194, Percent_Identity=29.8969072164948, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI116007232, Length=184, Percent_Identity=32.6086956521739, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI21356301, Length=199, Percent_Identity=31.1557788944724, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24663911, Length=196, Percent_Identity=30.1020408163265, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24641388, Length=204, Percent_Identity=30.8823529411765, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI281364892, Length=170, Percent_Identity=28.8235294117647, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI21355631, Length=169, Percent_Identity=30.1775147928994, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24649181, Length=220, Percent_Identity=27.7272727272727, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 29898; Mature: 29898

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVKGKKTALVTGASSGMGKAIAHRLIQDGYQVYVAARNVDRMADLALLGAHPLCMDVSR
CCCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHCCCCEEEECCC
DDDIVAGVNTILAQTGGVDVLVNNAGFGLYGPIEEIGIHEARYQFEVNLFGAARLTQLLL
CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHCCCCEEEEEEEEEECHHHHHHHHH
PAMRSKRAGHIVNITSMGGKMYSILGAWYHATKHALEGWSDCLRLEVAEFGIKVVIVEPG
HHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
VIETGFGDAATDSIAKRSASGPYGRLVQMVTKSIDTTYGHGKGSDPRVIADVVSRAVASN
EEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCC
NPRTRYAAGKFARMLIRMRVWLGDRMFDRIILSQTR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFVKGKKTALVTGASSGMGKAIAHRLIQDGYQVYVAARNVDRMADLALLGAHPLCMDVSR
CCCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHCCCCEEEECCC
DDDIVAGVNTILAQTGGVDVLVNNAGFGLYGPIEEIGIHEARYQFEVNLFGAARLTQLLL
CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHCCCCEEEEEEEEEECHHHHHHHHH
PAMRSKRAGHIVNITSMGGKMYSILGAWYHATKHALEGWSDCLRLEVAEFGIKVVIVEPG
HHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
VIETGFGDAATDSIAKRSASGPYGRLVQMVTKSIDTTYGHGKGSDPRVIADVVSRAVASN
EEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCC
NPRTRYAAGKFARMLIRMRVWLGDRMFDRIILSQTR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139899; 9252185 [H]