Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
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Accession | NC_003919 |
Length | 5,175,554 |
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The map label for this gene is uidR [C]
Identifier: 21241040
GI number: 21241040
Start: 320996
End: 321616
Strand: Direct
Name: uidR [C]
Synonym: XAC0266
Alternate gene names: 21241040
Gene position: 320996-321616 (Clockwise)
Preceding gene: 77748520
Following gene: 21241041
Centisome position: 6.2
GC content: 68.6
Gene sequence:
>621_bases ATGGCTTATCGACGCTCCGCCCTGATGGAAGAACGCTTGGCCGGCAACCGCGAACGGATCCTGCACGCGGCCCGCGTCCT GATCGCCGAAGGCGGCTACCGCAATGCACCGGTCACCGCGGTGGCCGCGGCCGCGGGCGTATCGACCGGGCAGATTTATC GACATTTCCCGTCAAAAGCCGAACTTTTCGTGGAAGTTCTAAGCGAGGCGGTGCAGCGTGAAATGGCCATCCTGCGTGCC ATCGCCGCCACCCAGGCCAGCGCAGCCGAGCGCTTGCGTAGCGCGATCGCCACCTTCGTACGACGGGCGCTGGCCGGGCC GGCGCTGGCATACGCCTTCATCGCCGAGCCGGTGGAGAGCGAGGTCGACGCCGAGCGCATCCGCGGCCGCCGCCTGTTCG GTGAGGTGTTTCGCCAGCTGCTTGCCGAAGGCGTGGCGGCCGGGGAGTTTCCGCAGCAGTCGCTGGACGCCGCGGCTGCC TGCATCGTCGGCGCGTTTACCGAGGCCTTGGTGGGGCCGATCGCTCCCAGCCGTGGCGACCCGCAACAGGGCGAGCAACT GGTCGAAGCGATCTGCGGCTTCTGTCTGCGCGCGGTGGGGGCGGCGCAAACGAGCAGCTGA
Upstream 100 bases:
>100_bases CCGGGTGGGAGCGGGCGGACCGCGCGGCGAATACGGCCAGACTAGCGGCCCGCAACAAAAAAGTGAACCAAAATTCAACT ATTGAACCAAGAATCACACC
Downstream 100 bases:
>100_bases CAGTGCACTGACCGCACATAAGGATGTGCCTCCCGGATGCAGCCGACTGTGCATATACTGTGCACCTACCTTGCCGGAGC CGTGCGATGGTCGCCGTTCT
Product: AcrR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator; Transcriptional Regulator TetR Family; ArcR Family Transcriptional Regulator; AcrR Family Transcriptional Regulator; Bacterial Regulatory Protein; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR
Number of amino acids: Translated: 206; Mature: 205
Protein sequence:
>206_residues MAYRRSALMEERLAGNRERILHAARVLIAEGGYRNAPVTAVAAAAGVSTGQIYRHFPSKAELFVEVLSEAVQREMAILRA IAATQASAAERLRSAIATFVRRALAGPALAYAFIAEPVESEVDAERIRGRRLFGEVFRQLLAEGVAAGEFPQQSLDAAAA CIVGAFTEALVGPIAPSRGDPQQGEQLVEAICGFCLRAVGAAQTSS
Sequences:
>Translated_206_residues MAYRRSALMEERLAGNRERILHAARVLIAEGGYRNAPVTAVAAAAGVSTGQIYRHFPSKAELFVEVLSEAVQREMAILRA IAATQASAAERLRSAIATFVRRALAGPALAYAFIAEPVESEVDAERIRGRRLFGEVFRQLLAEGVAAGEFPQQSLDAAAA CIVGAFTEALVGPIAPSRGDPQQGEQLVEAICGFCLRAVGAAQTSS >Mature_205_residues AYRRSALMEERLAGNRERILHAARVLIAEGGYRNAPVTAVAAAAGVSTGQIYRHFPSKAELFVEVLSEAVQREMAILRAI AATQASAAERLRSAIATFVRRALAGPALAYAFIAEPVESEVDAERIRGRRLFGEVFRQLLAEGVAAGEFPQQSLDAAAAC IVGAFTEALVGPIAPSRGDPQQGEQLVEAICGFCLRAVGAAQTSS
Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21825; Mature: 21694
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYRRSALMEERLAGNRERILHAARVLIAEGGYRNAPVTAVAAAAGVSTGQIYRHFPSKA CCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCCHHH ELFVEVLSEAVQREMAILRAIAATQASAAERLRSAIATFVRRALAGPALAYAFIAEPVES HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH EVDAERIRGRRLFGEVFRQLLAEGVAAGEFPQQSLDAAAACIVGAFTEALVGPIAPSRGD HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PQQGEQLVEAICGFCLRAVGAAQTSS HHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure AYRRSALMEERLAGNRERILHAARVLIAEGGYRNAPVTAVAAAAGVSTGQIYRHFPSKA CHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCCHHH ELFVEVLSEAVQREMAILRAIAATQASAAERLRSAIATFVRRALAGPALAYAFIAEPVES HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH EVDAERIRGRRLFGEVFRQLLAEGVAAGEFPQQSLDAAAACIVGAFTEALVGPIAPSRGD HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PQQGEQLVEAICGFCLRAVGAAQTSS HHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA