Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
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Accession | NC_003919 |
Length | 5,175,554 |
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The map label for this gene is accC [H]
Identifier: 21241037
GI number: 21241037
Start: 315823
End: 317850
Strand: Reverse
Name: accC [H]
Synonym: XAC0263
Alternate gene names: 21241037
Gene position: 317850-315823 (Counterclockwise)
Preceding gene: 21241038
Following gene: 21241036
Centisome position: 6.14
GC content: 66.27
Gene sequence:
>2028_bases ATGACCCAGCGCGACCCTATCGCCGCAGCAACGCAAGCGCCCTTCGACAAGATCCTGATCGCCAATCGCGGCGAGATCGC CTGCCGCGTCATCGCCACCTGCCGCGCCCTGGGCATTGCGACGGTGGCGGTGTACTCGGATGCAGACCGCAATGCACGGC ATGTGCGCATGGCGGACGAGGCAGTGCATATCGGCGCCGCCCCCGCGCAGCAGAGCTATCTGCGTGGCGAAGCGATCCTA CAAGCAGCACGCGCCACCGGTGCGCAGGCGATCCATCCCGGTTATGGCTTCCTGTCGGAAAACGCGGCATTTGCCGAGGC CTGCGCACATGCTGGCATCGTCTTCATCGGCCCGCCGGCAGCGGCGATTCGCGCGATGGGCGACAAGAGTGCGGCCAAGG CACTGATGCAACGGGCCGGCGTGCCGCTGACGCCGGGTTACCACGGTGACGAACAGGCGCCGGCATTCTTGCGTGCGCAA GCCGATGCAATCGGCTATCCGGTGTTGATCAAGGCCAGTGCTGGCGGTGGCGGCAAGGGCATGCGCCGTGTGGATGCCAG CGCAGCGTTCGACGACGCGTTGGCCAGTTGCCAGCGTGAGGCGCAGTCGGCATTCGGCAATGCGCACGTGCTGGTGGAAA AATATGTCCAACGGCCGCGGCACATCGAAATCCAGGTGTTCGGCGATACGCATGGCGAGGTGGTGTACCTGTTCGAACGC GACTGCTCGGTGCAGCGCCGCCACCAGAAGGTGCTGGAAGAAGCGCCGGCGCCCGGCATGAGCGAGGCCAGGCGCGCCGC GATGGGCAGGGCGGCGGTGGATGCGGCGCAGGCGGTGGGCTACGTGGGTGCCGGTACCGTGGAATTCATCGCCGGCCCGG ACGGCGATTTCTATTTCATGGAAATGAACACCCGTCTGCAGGTGGAGCACCCGGTGACCGAATTGATCACCGGCACCGAT CTGGTCGAGTGGCAATTGCGGGTTGCCGCAGGCGCGCGCTTGCCGCGCAGGCAGCACGAGCTGCGCATCCACGGGCATGC GCTGGAAGCGCGCCTGTACGCCGAAGATGCCGAGCGTGGCTTTCTACCCTCCACCGGCACGCTGCGTCAGTTGCAGATGC CTGCTGCCAGTGCGCATGTGCGTGTGGATGCGGGCGTAGAGCAAGGCGACACCATCAGCCCTTATTACGACCCGATGATC GCCAAGCTGATCGTCTGGGATACCGATCGCCCGGCCGCATTGGCACGCATGCGCGCGGCGTTGGCGCAATTCCACGCGAT CGGTGTCACCACCAACAGTGCATTTCTGTCGCGCCTGATCGCGACCGACTCGTTCGCGTCGGCGAATCTGGACACCGCGT TGATCGAGCGCGAACACGCCGTGCTGTTCCCAGAGGCGCGCAGCCCCGACAACGCCTGGTGGTGCCTGGCAGCGGTGTTG ATTGCCGATGCATTGCCGGCAGTGGCCGTTGATCCGGCCGATCCGCATTCGCCGTGGCAGCACACGGACGGTTGGCGCAT CGGTGCGCATGCAGCGCAGCGCATCGTCCTGGAAGCGAACGGCGAGCGCCGCCAACTCGCTGTGCGCCCGGATGCCGATG GCTGGCAAGTCACCAACGCAGACCAGATGCATACCTTGCGCTACCACCGGCACGAGACGGGCTTGCGTGTGGAGATGGAT GGCCGGCAATGGCGTGCACAGGTGTTGCGCGACGGCGCCACGCTGACCCTGATCGGGGCCAGGCAACGGGCCGTCTTCCG TCACCACGATGCACTGGCAGAAGCCGACCAGCCTACCCAGGAGGCCGGCGGACTGACCGCACCGATGCCCGGGCGCATCG TGTCCCTGCCCGCAACAGTGGGCCAGCCGGTCGCCCGTGGGCAGGCACTGGTGGTGCTGGAAGCGATGAAAATGGAGCAC ACCCTGCACGCGCCCAGCGATGGCACCGTGCAGGCGTACCTGGTGGCTGAGGGCGATCTGGTGGATGACGGTGCGGCGCT GGTGGAATTTGTGTCCGCGTCTGCGTAG
Upstream 100 bases:
>100_bases TGACAACCAACCTGCTTGCGCTCGATGTCCGTGTGCAACAGCAAGCTGTTTATCTTCGTAAGACGACCCGCCGCTACGGC GACGTGCAGAGACTGATCCG
Downstream 100 bases:
>100_bases CAGCGCATGGCAGGGTGACCAACGGCACGTTCGCCTGCGCGCACGCTGCCGCTAGCGTGGCAAATCGGCCGGCTCGGCCG CCTTGCCACCGGAGTCCCCA
Product: biotin carboxylase
Products: NA
Alternate protein names: Biotin carboxylase; Biotin carboxyl carrier protein; BCCP [H]
Number of amino acids: Translated: 675; Mature: 674
Protein sequence:
>675_residues MTQRDPIAAATQAPFDKILIANRGEIACRVIATCRALGIATVAVYSDADRNARHVRMADEAVHIGAAPAQQSYLRGEAIL QAARATGAQAIHPGYGFLSENAAFAEACAHAGIVFIGPPAAAIRAMGDKSAAKALMQRAGVPLTPGYHGDEQAPAFLRAQ ADAIGYPVLIKASAGGGGKGMRRVDASAAFDDALASCQREAQSAFGNAHVLVEKYVQRPRHIEIQVFGDTHGEVVYLFER DCSVQRRHQKVLEEAPAPGMSEARRAAMGRAAVDAAQAVGYVGAGTVEFIAGPDGDFYFMEMNTRLQVEHPVTELITGTD LVEWQLRVAAGARLPRRQHELRIHGHALEARLYAEDAERGFLPSTGTLRQLQMPAASAHVRVDAGVEQGDTISPYYDPMI AKLIVWDTDRPAALARMRAALAQFHAIGVTTNSAFLSRLIATDSFASANLDTALIEREHAVLFPEARSPDNAWWCLAAVL IADALPAVAVDPADPHSPWQHTDGWRIGAHAAQRIVLEANGERRQLAVRPDADGWQVTNADQMHTLRYHRHETGLRVEMD GRQWRAQVLRDGATLTLIGARQRAVFRHHDALAEADQPTQEAGGLTAPMPGRIVSLPATVGQPVARGQALVVLEAMKMEH TLHAPSDGTVQAYLVAEGDLVDDGAALVEFVSASA
Sequences:
>Translated_675_residues MTQRDPIAAATQAPFDKILIANRGEIACRVIATCRALGIATVAVYSDADRNARHVRMADEAVHIGAAPAQQSYLRGEAIL QAARATGAQAIHPGYGFLSENAAFAEACAHAGIVFIGPPAAAIRAMGDKSAAKALMQRAGVPLTPGYHGDEQAPAFLRAQ ADAIGYPVLIKASAGGGGKGMRRVDASAAFDDALASCQREAQSAFGNAHVLVEKYVQRPRHIEIQVFGDTHGEVVYLFER DCSVQRRHQKVLEEAPAPGMSEARRAAMGRAAVDAAQAVGYVGAGTVEFIAGPDGDFYFMEMNTRLQVEHPVTELITGTD LVEWQLRVAAGARLPRRQHELRIHGHALEARLYAEDAERGFLPSTGTLRQLQMPAASAHVRVDAGVEQGDTISPYYDPMI AKLIVWDTDRPAALARMRAALAQFHAIGVTTNSAFLSRLIATDSFASANLDTALIEREHAVLFPEARSPDNAWWCLAAVL IADALPAVAVDPADPHSPWQHTDGWRIGAHAAQRIVLEANGERRQLAVRPDADGWQVTNADQMHTLRYHRHETGLRVEMD GRQWRAQVLRDGATLTLIGARQRAVFRHHDALAEADQPTQEAGGLTAPMPGRIVSLPATVGQPVARGQALVVLEAMKMEH TLHAPSDGTVQAYLVAEGDLVDDGAALVEFVSASA >Mature_674_residues TQRDPIAAATQAPFDKILIANRGEIACRVIATCRALGIATVAVYSDADRNARHVRMADEAVHIGAAPAQQSYLRGEAILQ AARATGAQAIHPGYGFLSENAAFAEACAHAGIVFIGPPAAAIRAMGDKSAAKALMQRAGVPLTPGYHGDEQAPAFLRAQA DAIGYPVLIKASAGGGGKGMRRVDASAAFDDALASCQREAQSAFGNAHVLVEKYVQRPRHIEIQVFGDTHGEVVYLFERD CSVQRRHQKVLEEAPAPGMSEARRAAMGRAAVDAAQAVGYVGAGTVEFIAGPDGDFYFMEMNTRLQVEHPVTELITGTDL VEWQLRVAAGARLPRRQHELRIHGHALEARLYAEDAERGFLPSTGTLRQLQMPAASAHVRVDAGVEQGDTISPYYDPMIA KLIVWDTDRPAALARMRAALAQFHAIGVTTNSAFLSRLIATDSFASANLDTALIEREHAVLFPEARSPDNAWWCLAAVLI ADALPAVAVDPADPHSPWQHTDGWRIGAHAAQRIVLEANGERRQLAVRPDADGWQVTNADQMHTLRYHRHETGLRVEMDG RQWRAQVLRDGATLTLIGARQRAVFRHHDALAEADQPTQEAGGLTAPMPGRIVSLPATVGQPVARGQALVVLEAMKMEHT LHAPSDGTVQAYLVAEGDLVDDGAALVEFVSASA
Specific function: This protein carries two functions:biotin carboxyl carrier protein and biotin carboxyltransferase [H]
COG id: COG4770
COG function: function code I; Acetyl/propionyl-CoA carboxylase, alpha subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 biotinyl-binding domain [H]
Homologues:
Organism=Homo sapiens, GI116805327, Length=675, Percent_Identity=47.1111111111111, Blast_Score=602, Evalue=1e-172, Organism=Homo sapiens, GI65506442, Length=690, Percent_Identity=42.0289855072464, Blast_Score=474, Evalue=1e-133, Organism=Homo sapiens, GI189095269, Length=693, Percent_Identity=42.1356421356421, Blast_Score=474, Evalue=1e-133, Organism=Homo sapiens, GI295821183, Length=673, Percent_Identity=41.7533432392273, Blast_Score=465, Evalue=1e-131, Organism=Homo sapiens, GI106049528, Length=497, Percent_Identity=41.851106639839, Blast_Score=359, Evalue=4e-99, Organism=Homo sapiens, GI106049295, Length=497, Percent_Identity=41.851106639839, Blast_Score=359, Evalue=4e-99, Organism=Homo sapiens, GI106049292, Length=497, Percent_Identity=41.851106639839, Blast_Score=359, Evalue=4e-99, Organism=Homo sapiens, GI38679977, Length=722, Percent_Identity=29.2243767313019, Blast_Score=276, Evalue=7e-74, Organism=Homo sapiens, GI38679967, Length=722, Percent_Identity=29.2243767313019, Blast_Score=276, Evalue=7e-74, Organism=Homo sapiens, GI38679974, Length=722, Percent_Identity=29.2243767313019, Blast_Score=275, Evalue=7e-74, Organism=Homo sapiens, GI38679971, Length=722, Percent_Identity=29.2243767313019, Blast_Score=275, Evalue=7e-74, Organism=Homo sapiens, GI38679960, Length=722, Percent_Identity=29.2243767313019, Blast_Score=275, Evalue=7e-74, Organism=Homo sapiens, GI134142062, Length=723, Percent_Identity=28.0774550484094, Blast_Score=253, Evalue=5e-67, Organism=Escherichia coli, GI1789654, Length=447, Percent_Identity=50.3355704697987, Blast_Score=413, Evalue=1e-116, Organism=Caenorhabditis elegans, GI71987519, Length=670, Percent_Identity=46.865671641791, Blast_Score=559, Evalue=1e-159, Organism=Caenorhabditis elegans, GI17567343, Length=704, Percent_Identity=41.4772727272727, Blast_Score=457, Evalue=1e-128, Organism=Caenorhabditis elegans, GI17562816, Length=504, Percent_Identity=42.6587301587302, Blast_Score=348, Evalue=5e-96, Organism=Caenorhabditis elegans, GI133931226, Length=488, Percent_Identity=31.9672131147541, Blast_Score=221, Evalue=1e-57, Organism=Caenorhabditis elegans, GI71997168, Length=473, Percent_Identity=28.3298097251586, Blast_Score=192, Evalue=4e-49, Organism=Caenorhabditis elegans, GI71997163, Length=491, Percent_Identity=27.9022403258656, Blast_Score=192, Evalue=5e-49, Organism=Saccharomyces cerevisiae, GI6319685, Length=446, Percent_Identity=44.8430493273543, Blast_Score=397, Evalue=1e-111, Organism=Saccharomyces cerevisiae, GI6319695, Length=498, Percent_Identity=39.7590361445783, Blast_Score=315, Evalue=1e-86, Organism=Saccharomyces cerevisiae, GI6321376, Length=502, Percent_Identity=40.2390438247012, Blast_Score=305, Evalue=2e-83, Organism=Saccharomyces cerevisiae, GI6324343, Length=722, Percent_Identity=27.9778393351801, Blast_Score=251, Evalue=2e-67, Organism=Saccharomyces cerevisiae, GI6323863, Length=471, Percent_Identity=33.5456475583864, Blast_Score=246, Evalue=1e-65, Organism=Drosophila melanogaster, GI24651757, Length=670, Percent_Identity=47.6119402985075, Blast_Score=595, Evalue=1e-170, Organism=Drosophila melanogaster, GI24651759, Length=630, Percent_Identity=46.5079365079365, Blast_Score=542, Evalue=1e-154, Organism=Drosophila melanogaster, GI281363050, Length=472, Percent_Identity=43.4322033898305, Blast_Score=348, Evalue=9e-96, Organism=Drosophila melanogaster, GI24652224, Length=472, Percent_Identity=43.4322033898305, Blast_Score=348, Evalue=9e-96, Organism=Drosophila melanogaster, GI24652222, Length=472, Percent_Identity=43.4322033898305, Blast_Score=348, Evalue=9e-96, Organism=Drosophila melanogaster, GI24652220, Length=472, Percent_Identity=43.4322033898305, Blast_Score=348, Evalue=9e-96, Organism=Drosophila melanogaster, GI24652218, Length=472, Percent_Identity=43.4322033898305, Blast_Score=348, Evalue=9e-96, Organism=Drosophila melanogaster, GI24652212, Length=472, Percent_Identity=43.4322033898305, Blast_Score=348, Evalue=1e-95, Organism=Drosophila melanogaster, GI24652210, Length=472, Percent_Identity=43.4322033898305, Blast_Score=348, Evalue=1e-95, Organism=Drosophila melanogaster, GI24652214, Length=472, Percent_Identity=43.4322033898305, Blast_Score=348, Evalue=1e-95, Organism=Drosophila melanogaster, GI19921944, Length=472, Percent_Identity=43.4322033898305, Blast_Score=348, Evalue=1e-95, Organism=Drosophila melanogaster, GI24652216, Length=472, Percent_Identity=43.4322033898305, Blast_Score=348, Evalue=1e-95, Organism=Drosophila melanogaster, GI161076409, Length=718, Percent_Identity=28.9693593314763, Blast_Score=269, Evalue=5e-72, Organism=Drosophila melanogaster, GI161076407, Length=718, Percent_Identity=28.9693593314763, Blast_Score=268, Evalue=6e-72, Organism=Drosophila melanogaster, GI24586460, Length=718, Percent_Identity=28.9693593314763, Blast_Score=268, Evalue=6e-72, Organism=Drosophila melanogaster, GI24586458, Length=718, Percent_Identity=28.9693593314763, Blast_Score=268, Evalue=8e-72,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011761 - InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR001882 - InterPro: IPR011764 - InterPro: IPR005482 - InterPro: IPR000089 - InterPro: IPR005479 - InterPro: IPR005481 - InterPro: IPR013817 - InterPro: IPR016185 - InterPro: IPR011054 - InterPro: IPR011053 [H]
Pfam domain/function: PF02785 Biotin_carb_C; PF00364 Biotin_lipoyl; PF00289 CPSase_L_chain; PF02786 CPSase_L_D2 [H]
EC number: =6.3.4.14 [H]
Molecular weight: Translated: 72468; Mature: 72337
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: PS50975 ATP_GRASP ; PS00866 CPSASE_1 ; PS00867 CPSASE_2 ; PS50979 BC ; PS50968 BIOTINYL_LIPOYL ; PS00188 BIOTIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQRDPIAAATQAPFDKILIANRGEIACRVIATCRALGIATVAVYSDADRNARHVRMADE CCCCCCCCHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHEEEEEEECCCCCCCEEEECCC AVHIGAAPAQQSYLRGEAILQAARATGAQAIHPGYGFLSENAAFAEACAHAGIVFIGPPA EEEECCCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHCCEEEECCCH AAIRAMGDKSAAKALMQRAGVPLTPGYHGDEQAPAFLRAQADAIGYPVLIKASAGGGGKG HHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCC MRRVDASAAFDDALASCQREAQSAFGNAHVLVEKYVQRPRHIEIQVFGDTHGEVVYLFER CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEC DCSVQRRHQKVLEEAPAPGMSEARRAAMGRAAVDAAQAVGYVGAGTVEFIAGPDGDFYFM CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEE EMNTRLQVEHPVTELITGTDLVEWQLRVAAGARLPRRQHELRIHGHALEARLYAEDAERG EECCEEEECCCHHHHHCCCCCEEEEEEEHHCCCCCCCCCEEEEECEEEEEEEEECHHCCC FLPSTGTLRQLQMPAASAHVRVDAGVEQGDTISPYYDPMIAKLIVWDTDRPAALARMRAA CCCCCCCHHEEECCCCCCEEEEECCCCCCCCCCCHHHHHEEEEEEECCCCHHHHHHHHHH LAQFHAIGVTTNSAFLSRLIATDSFASANLDTALIEREHAVLFPEARSPDNAWWCLAAVL HHHHHHEEEEECHHHHHHHHHCCCCCCCCCCHHHHCCCCEEEECCCCCCCCHHHHHHHHH IADALPAVAVDPADPHSPWQHTDGWRIGAHAAQRIVLEANGERRQLAVRPDADGWQVTNA HHHCCCCEEECCCCCCCCCCCCCCEEECCHHHEEEEEECCCCCEEEEECCCCCCCEECCC DQMHTLRYHRHETGLRVEMDGRQWRAQVLRDGATLTLIGARQRAVFRHHDALAEADQPTQ HHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCCCHH EAGGLTAPMPGRIVSLPATVGQPVARGQALVVLEAMKMEHTLHAPSDGTVQAYLVAEGDL HHCCCCCCCCCCEEECCHHHCCHHHCCCEEEEEEHHHHHHHCCCCCCCCEEEEEEECCCC VDDGAALVEFVSASA CCCHHHHHHHHHCCC >Mature Secondary Structure TQRDPIAAATQAPFDKILIANRGEIACRVIATCRALGIATVAVYSDADRNARHVRMADE CCCCCCCHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHEEEEEEECCCCCCCEEEECCC AVHIGAAPAQQSYLRGEAILQAARATGAQAIHPGYGFLSENAAFAEACAHAGIVFIGPPA EEEECCCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHCCEEEECCCH AAIRAMGDKSAAKALMQRAGVPLTPGYHGDEQAPAFLRAQADAIGYPVLIKASAGGGGKG HHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCC MRRVDASAAFDDALASCQREAQSAFGNAHVLVEKYVQRPRHIEIQVFGDTHGEVVYLFER CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEC DCSVQRRHQKVLEEAPAPGMSEARRAAMGRAAVDAAQAVGYVGAGTVEFIAGPDGDFYFM CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEE EMNTRLQVEHPVTELITGTDLVEWQLRVAAGARLPRRQHELRIHGHALEARLYAEDAERG EECCEEEECCCHHHHHCCCCCEEEEEEEHHCCCCCCCCCEEEEECEEEEEEEEECHHCCC FLPSTGTLRQLQMPAASAHVRVDAGVEQGDTISPYYDPMIAKLIVWDTDRPAALARMRAA CCCCCCCHHEEECCCCCCEEEEECCCCCCCCCCCHHHHHEEEEEEECCCCHHHHHHHHHH LAQFHAIGVTTNSAFLSRLIATDSFASANLDTALIEREHAVLFPEARSPDNAWWCLAAVL HHHHHHEEEEECHHHHHHHHHCCCCCCCCCCHHHHCCCCEEEECCCCCCCCHHHHHHHHH IADALPAVAVDPADPHSPWQHTDGWRIGAHAAQRIVLEANGERRQLAVRPDADGWQVTNA HHHCCCCEEECCCCCCCCCCCCCCEEECCHHHEEEEEECCCCCEEEEECCCCCCCEECCC DQMHTLRYHRHETGLRVEMDGRQWRAQVLRDGATLTLIGARQRAVFRHHDALAEADQPTQ HHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCCCHH EAGGLTAPMPGRIVSLPATVGQPVARGQALVVLEAMKMEHTLHAPSDGTVQAYLVAEGDL HHCCCCCCCCCCEEECCHHHCCHHHCCCEEEEEEHHHHHHHCCCCCCCCEEEEEEECCCC VDDGAALVEFVSASA CCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]