Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
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Accession | NC_003901 |
Length | 4,096,345 |
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The map label for this gene is 21226841
Identifier: 21226841
GI number: 21226841
Start: 886162
End: 887295
Strand: Reverse
Name: 21226841
Synonym: MM_0739
Alternate gene names: NA
Gene position: 887295-886162 (Counterclockwise)
Preceding gene: 21226842
Following gene: 21226837
Centisome position: 21.66
GC content: 36.95
Gene sequence:
>1134_bases TTGACCTGCTGCAAAGAATGCGGATCTACCCTTGAGAATGTTGAAGTTGAAGCTTATGAGAGAAGACAGGTCTTTGACAT TCCTCCCGTAAATCTAATTGTTACAGAACATAAAAGTCAGATTAAAACCTGTCCTTGTTGTGGAAAGTTGAATAAAGCCG TTTTTCCCGAATCAGTGAAATATCCGGTTCAGTATGGCCCTAATATTTTAGCTTCAGCTATTTACTGTAAAAATTACCAG TTTGTTCCTTATGATAGAATTTCTGAGTTATTTGAAGACATTATGGGAATAAAAATCTGTCCTGCTACGATAATTAGAGC AGAAAGAGAATGTTTCCAGAATTTAGAGGAATTTGAAAACGTTATTAGAGAGAAGTTATTAGCCTCGCCTGTAATCAATT TTGATGAAACTGGTATGAAGATTGAAGGAAAAAGACACTGGCTTCATGTAGCTTCTAATGAAAAATACACATGTTATTTT GCTCATACAAAAAGAGGAGCAGAAGCAATAGATGCTATGGGAATTCTTCCGAAGTTTAAGGGAGTAGCAGTTCATGATGG ATGGAAACCTTACAACGTTTATGATTGTGATCATGCTCTGTGTAACGCTCATTTACAGAGAGAACTTACAGGAATTGAAG AGAACTATAAACAGACATGGGCTAAAGAGATGAATGAACTGCTCACTGAGATGAAGAAATACACTGATGAGTGTAAAGAG CAATTAAGAGAACCTGATTTTGAGCAAATTAAAGCATTGGAAGAAAGGTTTGATGCAATTATCATTAGAGCGCTTGAAGA AAATCCGCATTCTCTAAATCCTGAAAAACAGGGAAAACGCGGTAAAAATCCAAAAACAAAATCAAGGAATCTGCTGGATA GGTTTATAGAACACAAAGAAAAGATTCTGAGATTCCTGACAGATTTGAAAGTTCCATTTGATAATAATCAGGCAGAAAGA GATATCAGGATGATGAAACTACAGCAGAAAATATCGGGAACTTTCAGAAAAGCAATGGGAGCGCAAGCTTTCTGCAGAAT TAGGGCGTACATTTCTACAGGAAAAAAGAACGGTTTACCTGTTTTAGAGGGTATTCGTGCGGCGCTCATAGGAGCGCCGT TAACTATACTCTGA
Upstream 100 bases:
>100_bases TCTGCGTAAACCAAGCGGGAAGAAACCTGGAGGTCAGGAAGGTCATCCAGGCACGACTCTTGATATGGTTGATCATCCTG AGTAGGTAATAGAACATTCT
Downstream 100 bases:
>100_bases GCAGTTACGAATAATCTTGAATAAAAAGGGTAAAGGTATAAAGAAAAAATGGGTAACGAAAAAAGATATAGAGAAAAAAA TGGATAATGAAAAAAGATAT
Product: transposase
Products: NA
Alternate protein names: Transposase IS; ISPsy5 Transposase; Archae-Like Transposase; Transposase Remnant; IS66 Family Element Transposase; Transposase Of
Number of amino acids: Translated: 377; Mature: 376
Protein sequence:
>377_residues MTCCKECGSTLENVEVEAYERRQVFDIPPVNLIVTEHKSQIKTCPCCGKLNKAVFPESVKYPVQYGPNILASAIYCKNYQ FVPYDRISELFEDIMGIKICPATIIRAERECFQNLEEFENVIREKLLASPVINFDETGMKIEGKRHWLHVASNEKYTCYF AHTKRGAEAIDAMGILPKFKGVAVHDGWKPYNVYDCDHALCNAHLQRELTGIEENYKQTWAKEMNELLTEMKKYTDECKE QLREPDFEQIKALEERFDAIIIRALEENPHSLNPEKQGKRGKNPKTKSRNLLDRFIEHKEKILRFLTDLKVPFDNNQAER DIRMMKLQQKISGTFRKAMGAQAFCRIRAYISTGKKNGLPVLEGIRAALIGAPLTIL
Sequences:
>Translated_377_residues MTCCKECGSTLENVEVEAYERRQVFDIPPVNLIVTEHKSQIKTCPCCGKLNKAVFPESVKYPVQYGPNILASAIYCKNYQ FVPYDRISELFEDIMGIKICPATIIRAERECFQNLEEFENVIREKLLASPVINFDETGMKIEGKRHWLHVASNEKYTCYF AHTKRGAEAIDAMGILPKFKGVAVHDGWKPYNVYDCDHALCNAHLQRELTGIEENYKQTWAKEMNELLTEMKKYTDECKE QLREPDFEQIKALEERFDAIIIRALEENPHSLNPEKQGKRGKNPKTKSRNLLDRFIEHKEKILRFLTDLKVPFDNNQAER DIRMMKLQQKISGTFRKAMGAQAFCRIRAYISTGKKNGLPVLEGIRAALIGAPLTIL >Mature_376_residues TCCKECGSTLENVEVEAYERRQVFDIPPVNLIVTEHKSQIKTCPCCGKLNKAVFPESVKYPVQYGPNILASAIYCKNYQF VPYDRISELFEDIMGIKICPATIIRAERECFQNLEEFENVIREKLLASPVINFDETGMKIEGKRHWLHVASNEKYTCYFA HTKRGAEAIDAMGILPKFKGVAVHDGWKPYNVYDCDHALCNAHLQRELTGIEENYKQTWAKEMNELLTEMKKYTDECKEQ LREPDFEQIKALEERFDAIIIRALEENPHSLNPEKQGKRGKNPKTKSRNLLDRFIEHKEKILRFLTDLKVPFDNNQAERD IRMMKLQQKISGTFRKAMGAQAFCRIRAYISTGKKNGLPVLEGIRAALIGAPLTIL
Specific function: Unknown
COG id: COG3436
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43446; Mature: 43315
Theoretical pI: Translated: 8.07; Mature: 8.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 3.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTCCKECGSTLENVEVEAYERRQVFDIPPVNLIVTEHKSQIKTCPCCGKLNKAVFPESVK CCCHHHHCCHHHCCCHHHHHCCCEECCCCCEEEEECCHHHCCCCCCCCCCCHHCCCCCCC YPVQYGPNILASAIYCKNYQFVPYDRISELFEDIMGIKICPATIIRAERECFQNLEEFEN CCHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHHHHHHH VIREKLLASPVINFDETGMKIEGKRHWLHVASNEKYTCYFAHTKRGAEAIDAMGILPKFK HHHHHHHHCCCCCCCCCCCEEECCEEEEEEECCCEEEEEEECCCCCHHHHHHHHCCCCCC GVAVHDGWKPYNVYDCDHALCNAHLQRELTGIEENYKQTWAKEMNELLTEMKKYTDECKE CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLREPDFEQIKALEERFDAIIIRALEENPHSLNPEKQGKRGKNPKTKSRNLLDRFIEHKE HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHH KILRFLTDLKVPFDNNQAERDIRMMKLQQKISGTFRKAMGAQAFCRIRAYISTGKKNGLP HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH VLEGIRAALIGAPLTIL HHHHHHHHHHCCCHHCC >Mature Secondary Structure TCCKECGSTLENVEVEAYERRQVFDIPPVNLIVTEHKSQIKTCPCCGKLNKAVFPESVK CCHHHHCCHHHCCCHHHHHCCCEECCCCCEEEEECCHHHCCCCCCCCCCCHHCCCCCCC YPVQYGPNILASAIYCKNYQFVPYDRISELFEDIMGIKICPATIIRAERECFQNLEEFEN CCHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHHHHHHH VIREKLLASPVINFDETGMKIEGKRHWLHVASNEKYTCYFAHTKRGAEAIDAMGILPKFK HHHHHHHHCCCCCCCCCCCEEECCEEEEEEECCCEEEEEEECCCCCHHHHHHHHCCCCCC GVAVHDGWKPYNVYDCDHALCNAHLQRELTGIEENYKQTWAKEMNELLTEMKKYTDECKE CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLREPDFEQIKALEERFDAIIIRALEENPHSLNPEKQGKRGKNPKTKSRNLLDRFIEHKE HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHH KILRFLTDLKVPFDNNQAERDIRMMKLQQKISGTFRKAMGAQAFCRIRAYISTGKKNGLP HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH VLEGIRAALIGAPLTIL HHHHHHHHHHCCCHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA