Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

Click here to switch to the map view.

The map label for this gene is 21226841

Identifier: 21226841

GI number: 21226841

Start: 886162

End: 887295

Strand: Reverse

Name: 21226841

Synonym: MM_0739

Alternate gene names: NA

Gene position: 887295-886162 (Counterclockwise)

Preceding gene: 21226842

Following gene: 21226837

Centisome position: 21.66

GC content: 36.95

Gene sequence:

>1134_bases
TTGACCTGCTGCAAAGAATGCGGATCTACCCTTGAGAATGTTGAAGTTGAAGCTTATGAGAGAAGACAGGTCTTTGACAT
TCCTCCCGTAAATCTAATTGTTACAGAACATAAAAGTCAGATTAAAACCTGTCCTTGTTGTGGAAAGTTGAATAAAGCCG
TTTTTCCCGAATCAGTGAAATATCCGGTTCAGTATGGCCCTAATATTTTAGCTTCAGCTATTTACTGTAAAAATTACCAG
TTTGTTCCTTATGATAGAATTTCTGAGTTATTTGAAGACATTATGGGAATAAAAATCTGTCCTGCTACGATAATTAGAGC
AGAAAGAGAATGTTTCCAGAATTTAGAGGAATTTGAAAACGTTATTAGAGAGAAGTTATTAGCCTCGCCTGTAATCAATT
TTGATGAAACTGGTATGAAGATTGAAGGAAAAAGACACTGGCTTCATGTAGCTTCTAATGAAAAATACACATGTTATTTT
GCTCATACAAAAAGAGGAGCAGAAGCAATAGATGCTATGGGAATTCTTCCGAAGTTTAAGGGAGTAGCAGTTCATGATGG
ATGGAAACCTTACAACGTTTATGATTGTGATCATGCTCTGTGTAACGCTCATTTACAGAGAGAACTTACAGGAATTGAAG
AGAACTATAAACAGACATGGGCTAAAGAGATGAATGAACTGCTCACTGAGATGAAGAAATACACTGATGAGTGTAAAGAG
CAATTAAGAGAACCTGATTTTGAGCAAATTAAAGCATTGGAAGAAAGGTTTGATGCAATTATCATTAGAGCGCTTGAAGA
AAATCCGCATTCTCTAAATCCTGAAAAACAGGGAAAACGCGGTAAAAATCCAAAAACAAAATCAAGGAATCTGCTGGATA
GGTTTATAGAACACAAAGAAAAGATTCTGAGATTCCTGACAGATTTGAAAGTTCCATTTGATAATAATCAGGCAGAAAGA
GATATCAGGATGATGAAACTACAGCAGAAAATATCGGGAACTTTCAGAAAAGCAATGGGAGCGCAAGCTTTCTGCAGAAT
TAGGGCGTACATTTCTACAGGAAAAAAGAACGGTTTACCTGTTTTAGAGGGTATTCGTGCGGCGCTCATAGGAGCGCCGT
TAACTATACTCTGA

Upstream 100 bases:

>100_bases
TCTGCGTAAACCAAGCGGGAAGAAACCTGGAGGTCAGGAAGGTCATCCAGGCACGACTCTTGATATGGTTGATCATCCTG
AGTAGGTAATAGAACATTCT

Downstream 100 bases:

>100_bases
GCAGTTACGAATAATCTTGAATAAAAAGGGTAAAGGTATAAAGAAAAAATGGGTAACGAAAAAAGATATAGAGAAAAAAA
TGGATAATGAAAAAAGATAT

Product: transposase

Products: NA

Alternate protein names: Transposase IS; ISPsy5 Transposase; Archae-Like Transposase; Transposase Remnant; IS66 Family Element Transposase; Transposase Of

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MTCCKECGSTLENVEVEAYERRQVFDIPPVNLIVTEHKSQIKTCPCCGKLNKAVFPESVKYPVQYGPNILASAIYCKNYQ
FVPYDRISELFEDIMGIKICPATIIRAERECFQNLEEFENVIREKLLASPVINFDETGMKIEGKRHWLHVASNEKYTCYF
AHTKRGAEAIDAMGILPKFKGVAVHDGWKPYNVYDCDHALCNAHLQRELTGIEENYKQTWAKEMNELLTEMKKYTDECKE
QLREPDFEQIKALEERFDAIIIRALEENPHSLNPEKQGKRGKNPKTKSRNLLDRFIEHKEKILRFLTDLKVPFDNNQAER
DIRMMKLQQKISGTFRKAMGAQAFCRIRAYISTGKKNGLPVLEGIRAALIGAPLTIL

Sequences:

>Translated_377_residues
MTCCKECGSTLENVEVEAYERRQVFDIPPVNLIVTEHKSQIKTCPCCGKLNKAVFPESVKYPVQYGPNILASAIYCKNYQ
FVPYDRISELFEDIMGIKICPATIIRAERECFQNLEEFENVIREKLLASPVINFDETGMKIEGKRHWLHVASNEKYTCYF
AHTKRGAEAIDAMGILPKFKGVAVHDGWKPYNVYDCDHALCNAHLQRELTGIEENYKQTWAKEMNELLTEMKKYTDECKE
QLREPDFEQIKALEERFDAIIIRALEENPHSLNPEKQGKRGKNPKTKSRNLLDRFIEHKEKILRFLTDLKVPFDNNQAER
DIRMMKLQQKISGTFRKAMGAQAFCRIRAYISTGKKNGLPVLEGIRAALIGAPLTIL
>Mature_376_residues
TCCKECGSTLENVEVEAYERRQVFDIPPVNLIVTEHKSQIKTCPCCGKLNKAVFPESVKYPVQYGPNILASAIYCKNYQF
VPYDRISELFEDIMGIKICPATIIRAERECFQNLEEFENVIREKLLASPVINFDETGMKIEGKRHWLHVASNEKYTCYFA
HTKRGAEAIDAMGILPKFKGVAVHDGWKPYNVYDCDHALCNAHLQRELTGIEENYKQTWAKEMNELLTEMKKYTDECKEQ
LREPDFEQIKALEERFDAIIIRALEENPHSLNPEKQGKRGKNPKTKSRNLLDRFIEHKEKILRFLTDLKVPFDNNQAERD
IRMMKLQQKISGTFRKAMGAQAFCRIRAYISTGKKNGLPVLEGIRAALIGAPLTIL

Specific function: Unknown

COG id: COG3436

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43446; Mature: 43315

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTCCKECGSTLENVEVEAYERRQVFDIPPVNLIVTEHKSQIKTCPCCGKLNKAVFPESVK
CCCHHHHCCHHHCCCHHHHHCCCEECCCCCEEEEECCHHHCCCCCCCCCCCHHCCCCCCC
YPVQYGPNILASAIYCKNYQFVPYDRISELFEDIMGIKICPATIIRAERECFQNLEEFEN
CCHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHHHHHHH
VIREKLLASPVINFDETGMKIEGKRHWLHVASNEKYTCYFAHTKRGAEAIDAMGILPKFK
HHHHHHHHCCCCCCCCCCCEEECCEEEEEEECCCEEEEEEECCCCCHHHHHHHHCCCCCC
GVAVHDGWKPYNVYDCDHALCNAHLQRELTGIEENYKQTWAKEMNELLTEMKKYTDECKE
CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLREPDFEQIKALEERFDAIIIRALEENPHSLNPEKQGKRGKNPKTKSRNLLDRFIEHKE
HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHH
KILRFLTDLKVPFDNNQAERDIRMMKLQQKISGTFRKAMGAQAFCRIRAYISTGKKNGLP
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
VLEGIRAALIGAPLTIL
HHHHHHHHHHCCCHHCC
>Mature Secondary Structure 
TCCKECGSTLENVEVEAYERRQVFDIPPVNLIVTEHKSQIKTCPCCGKLNKAVFPESVK
CCHHHHCCHHHCCCHHHHHCCCEECCCCCEEEEECCHHHCCCCCCCCCCCHHCCCCCCC
YPVQYGPNILASAIYCKNYQFVPYDRISELFEDIMGIKICPATIIRAERECFQNLEEFEN
CCHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHHHHHHH
VIREKLLASPVINFDETGMKIEGKRHWLHVASNEKYTCYFAHTKRGAEAIDAMGILPKFK
HHHHHHHHCCCCCCCCCCCEEECCEEEEEEECCCEEEEEEECCCCCHHHHHHHHCCCCCC
GVAVHDGWKPYNVYDCDHALCNAHLQRELTGIEENYKQTWAKEMNELLTEMKKYTDECKE
CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLREPDFEQIKALEERFDAIIIRALEENPHSLNPEKQGKRGKNPKTKSRNLLDRFIEHKE
HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHH
KILRFLTDLKVPFDNNQAERDIRMMKLQQKISGTFRKAMGAQAFCRIRAYISTGKKNGLP
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
VLEGIRAALIGAPLTIL
HHHHHHHHHHCCCHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA