| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226810
Identifier: 21226810
GI number: 21226810
Start: 853539
End: 854588
Strand: Direct
Name: 21226810
Synonym: MM_0708
Alternate gene names: NA
Gene position: 853539-854588 (Clockwise)
Preceding gene: 21226809
Following gene: 21226813
Centisome position: 20.84
GC content: 49.05
Gene sequence:
>1050_bases ATGGCCTGGATAGAACCGGAAGTAACAGAAAAACCTAAAAAACCGATGTTTTTGTGCGTACTTTCCAGCACGAAGACAGC ACATATTCCAAAACTCTCGGCAGCAGGAAAAACAGCTGAACTTACAGACTACACGCCTGCGGGGGATGCGGAACTTATGG AAACAGGAAACATTATCAGTGTACCGGTGCTTCCCATGACTCCTCCTTATGACACGCCTACCCCTGCAATTATGACCCGT TCGGCGCTGAAGCTTACGGACGCTCCCTACCATTTTATAAATTCGGGCTTAATAGTGACTCCGGATGTCCCGTGCATCGA CCTGAAAGCAAATCCCGGAGAAGACATAAGAGAGCCTGTTGCAGTAATGGATGTGCAGGGTATATACGAAAGGGCGAAGC TCCTTGCAAAGCGGCTCAGAAACCAGGCAGACCACGTGGTGATCGGGGAAAGCATTCCCGGAGGCACAACAACGGCAATG GGAGTTTTAATGGCGCTCGGGTATAATGGGAATGTCAGCAGTAGCGCAGATGAAAACCCTCTTGAGCTTAAAAAACAGGT TGTCGAAGAGGGGATGAAAGCTTCAGGCCTTACATTTGGCTGCCTTAAAGACGACCCCATGAAAGCTATTGCCTGCATGG GAGACCCCATGATGCCTGCAGTTGCAGGGCTTGTTGCGGGTTTTCAGGACACTGATACCAGCGTTGTCCTTGCCGGCGGA ACTCAAATGGCAGCTGTTTATGCTCTCATTAAACACATGGGCTTAAATACGGAAAAAATTGCAATTGCAACTACCCGCTA TGTTGTGGAAGACAAATCCGCAAATTTCATTCAGCTGACCACAACTCTTGGCGTACCTGTAGTTTATGTTGCAGACCCCG GATTTGGCAAGTCCAGCATGAAAGGGCTTCACAGGTATGAGACCGGAACTATAAAAGAAGGTGCTGGTGCCGGCGGAGCC ATGTATCTTGCAGGGCTTTTCGGTATTACTCAGGACCAGTTCAGGACAGAAGTGGAAAATGTCTGCAAACTGCTTAAAGC TGGGCACTGA
Upstream 100 bases:
>100_bases GATGTTTAGTATTGAATCTGAAGGTCTGTACAGAATCCCGGAAAAAATATATTGAAATTTTCTAAAAACTTATCTTCAAA ATTTCATAGAGGAGATATGA
Downstream 100 bases:
>100_bases AGAAAAACTGCTTAAAAAATAAATTTTACAAAATTTATATTTTTTTATATAGAAGTCAGCTGAATTTTTCTTACATAATA CACAGGAAATCACTACACAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 349; Mature: 348
Protein sequence:
>349_residues MAWIEPEVTEKPKKPMFLCVLSSTKTAHIPKLSAAGKTAELTDYTPAGDAELMETGNIISVPVLPMTPPYDTPTPAIMTR SALKLTDAPYHFINSGLIVTPDVPCIDLKANPGEDIREPVAVMDVQGIYERAKLLAKRLRNQADHVVIGESIPGGTTTAM GVLMALGYNGNVSSSADENPLELKKQVVEEGMKASGLTFGCLKDDPMKAIACMGDPMMPAVAGLVAGFQDTDTSVVLAGG TQMAAVYALIKHMGLNTEKIAIATTRYVVEDKSANFIQLTTTLGVPVVYVADPGFGKSSMKGLHRYETGTIKEGAGAGGA MYLAGLFGITQDQFRTEVENVCKLLKAGH
Sequences:
>Translated_349_residues MAWIEPEVTEKPKKPMFLCVLSSTKTAHIPKLSAAGKTAELTDYTPAGDAELMETGNIISVPVLPMTPPYDTPTPAIMTR SALKLTDAPYHFINSGLIVTPDVPCIDLKANPGEDIREPVAVMDVQGIYERAKLLAKRLRNQADHVVIGESIPGGTTTAM GVLMALGYNGNVSSSADENPLELKKQVVEEGMKASGLTFGCLKDDPMKAIACMGDPMMPAVAGLVAGFQDTDTSVVLAGG TQMAAVYALIKHMGLNTEKIAIATTRYVVEDKSANFIQLTTTLGVPVVYVADPGFGKSSMKGLHRYETGTIKEGAGAGGA MYLAGLFGITQDQFRTEVENVCKLLKAGH >Mature_348_residues AWIEPEVTEKPKKPMFLCVLSSTKTAHIPKLSAAGKTAELTDYTPAGDAELMETGNIISVPVLPMTPPYDTPTPAIMTRS ALKLTDAPYHFINSGLIVTPDVPCIDLKANPGEDIREPVAVMDVQGIYERAKLLAKRLRNQADHVVIGESIPGGTTTAMG VLMALGYNGNVSSSADENPLELKKQVVEEGMKASGLTFGCLKDDPMKAIACMGDPMMPAVAGLVAGFQDTDTSVVLAGGT QMAAVYALIKHMGLNTEKIAIATTRYVVEDKSANFIQLTTTLGVPVVYVADPGFGKSSMKGLHRYETGTIKEGAGAGGAM YLAGLFGITQDQFRTEVENVCKLLKAGH
Specific function: Unknown
COG id: COG2038
COG function: function code H; NaMN:DMB phosphoribosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0284 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y708_METMA (Q8PYZ0)
Other databases:
- EMBL: AE008384 - RefSeq: NP_632732.1 - ProteinModelPortal: Q8PYZ0 - GeneID: 1479050 - GenomeReviews: AE008384_GR - KEGG: mma:MM_0708 - NMPDR: fig|192952.1.peg.708 - HOGENOM: HBG497525 - OMA: QMLAVYA - ProtClustDB: PRK04447 - BioCyc: MMAZ192952:MM0708-MONOMER - HAMAP: MF_01086 - InterPro: IPR003200 - InterPro: IPR002805 - TIGRFAMs: TIGR00303
Pfam domain/function: PF02277 DBI_PRT; SSF52733 NN:DBI_PRT
EC number: NA
Molecular weight: Translated: 37006; Mature: 36875
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAWIEPEVTEKPKKPMFLCVLSSTKTAHIPKLSAAGKTAELTDYTPAGDAELMETGNIIS CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEE VPVLPMTPPYDTPTPAIMTRSALKLTDAPYHFINSGLIVTPDVPCIDLKANPGEDIREPV EEEECCCCCCCCCCHHHHHHHHHEECCCCHHHHCCCEEECCCCCEEEECCCCCHHHHCCH AVMDVQGIYERAKLLAKRLRNQADHVVIGESIPGGTTTAMGVLMALGYNGNVSSSADENP HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCH LELKKQVVEEGMKASGLTFGCLKDDPMKAIACMGDPMMPAVAGLVAGFQDTDTSVVLAGG HHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEECC TQMAAVYALIKHMGLNTEKIAIATTRYVVEDKSANFIQLTTTLGVPVVYVADPGFGKSSM HHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEEEEECCCCEEEEECCCCCHHHH KGLHRYETGTIKEGAGAGGAMYLAGLFGITQDQFRTEVENVCKLLKAGH HHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AWIEPEVTEKPKKPMFLCVLSSTKTAHIPKLSAAGKTAELTDYTPAGDAELMETGNIIS CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEE VPVLPMTPPYDTPTPAIMTRSALKLTDAPYHFINSGLIVTPDVPCIDLKANPGEDIREPV EEEECCCCCCCCCCHHHHHHHHHEECCCCHHHHCCCEEECCCCCEEEECCCCCHHHHCCH AVMDVQGIYERAKLLAKRLRNQADHVVIGESIPGGTTTAMGVLMALGYNGNVSSSADENP HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCH LELKKQVVEEGMKASGLTFGCLKDDPMKAIACMGDPMMPAVAGLVAGFQDTDTSVVLAGG HHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEECC TQMAAVYALIKHMGLNTEKIAIATTRYVVEDKSANFIQLTTTLGVPVVYVADPGFGKSSM HHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEEEEECCCCEEEEECCCCCHHHH KGLHRYETGTIKEGAGAGGAMYLAGLFGITQDQFRTEVENVCKLLKAGH HHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12125824