| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226734
Identifier: 21226734
GI number: 21226734
Start: 761952
End: 762437
Strand: Direct
Name: 21226734
Synonym: MM_0632
Alternate gene names: NA
Gene position: 761952-762437 (Clockwise)
Preceding gene: 21226733
Following gene: 21226735
Centisome position: 18.6
GC content: 42.39
Gene sequence:
>486_bases ATGATAGGAAATGAAGAAAAAATAAATAAGCCAGCAGATCCGGCAAACCTTACAGAAGGAGAGAAAAAACACGTACCGGT TATTGAAGCTCCTGAAATGGTAATTGCAGGAAGGCCTTTTGAAGTTGCCGTCACGGTTGGCAGTATTCCCCATGTAATGG AAGAAAAACATTTCATAGAATGGGTTGAACTTTACCTGCACAACAAACTTGTAGGGAGAAAAGAGCTGGATCCTTCCGGA GAAAAAGTTGCAACAGTGATTTTCGAAGTGGAAGCCGATGAGGCCCTGATTGCTATCAAAGAAATAGAAACATGCAGGGT CCGTGGAGTTAATATCTGCGGCAGCTGCGGAGAGAAATCAGTAATAGCAAACCTTCGTGCAGTGGAAAAATGCAATGTCC ACGGCATATGGGAAGAATACAAAAAAATAGAGATAATGTCAGGGGAAGAAAGAGAAGAAGGCAAAAAATGCGTCTGGAAA GCCTGA
Upstream 100 bases:
>100_bases AAAACTTCCGGATACATACATTCTAAATTCGGCAAGGGTAAAAGCTCGAAGTAAAAACATACTGAAGAAGCAAGATTGTA AAAAAAGGTAGGTTATGACC
Downstream 100 bases:
>100_bases AAATTTGAACAAAATAACTGGGGGAAAGGCAGTGAAAAGCCCGGGACTTCTAAGTCTAATCATTACTATTCTTTTTGCAG GATTGATCATATTTGCCGGA
Product: desulfoferrodoxin
Products: NA
Alternate protein names: Neelarodoxin; Twin-Arginine Translocation Pathway Signal; Rubredoxin Superoxide Reductase
Number of amino acids: Translated: 161; Mature: 161
Protein sequence:
>161_residues MIGNEEKINKPADPANLTEGEKKHVPVIEAPEMVIAGRPFEVAVTVGSIPHVMEEKHFIEWVELYLHNKLVGRKELDPSG EKVATVIFEVEADEALIAIKEIETCRVRGVNICGSCGEKSVIANLRAVEKCNVHGIWEEYKKIEIMSGEEREEGKKCVWK A
Sequences:
>Translated_161_residues MIGNEEKINKPADPANLTEGEKKHVPVIEAPEMVIAGRPFEVAVTVGSIPHVMEEKHFIEWVELYLHNKLVGRKELDPSG EKVATVIFEVEADEALIAIKEIETCRVRGVNICGSCGEKSVIANLRAVEKCNVHGIWEEYKKIEIMSGEEREEGKKCVWK A >Mature_161_residues MIGNEEKINKPADPANLTEGEKKHVPVIEAPEMVIAGRPFEVAVTVGSIPHVMEEKHFIEWVELYLHNKLVGRKELDPSG EKVATVIFEVEADEALIAIKEIETCRVRGVNICGSCGEKSVIANLRAVEKCNVHGIWEEYKKIEIMSGEEREEGKKCVWK A
Specific function: Unknown
COG id: COG2033
COG function: function code C; Desulfoferrodoxin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18020; Mature: 18020
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIGNEEKINKPADPANLTEGEKKHVPVIEAPEMVIAGRPFEVAVTVGSIPHVMEEKHFIE CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCEEEEEEECCCCHHHHHHHHHH WVELYLHNKLVGRKELDPSGEKVATVIFEVEADEALIAIKEIETCRVRGVNICGSCGEKS HHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCEEEEEEHHCCHHCCCCEECCCCCCHH VIANLRAVEKCNVHGIWEEYKKIEIMSGEEREEGKKCVWKA HHHHHHHHHHCCCCCHHHHHHEEEEECCCCCCCCCEECCCC >Mature Secondary Structure MIGNEEKINKPADPANLTEGEKKHVPVIEAPEMVIAGRPFEVAVTVGSIPHVMEEKHFIE CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCEEEEEEECCCCHHHHHHHHHH WVELYLHNKLVGRKELDPSGEKVATVIFEVEADEALIAIKEIETCRVRGVNICGSCGEKS HHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCEEEEEEHHCCHHCCCCEECCCCCCHH VIANLRAVEKCNVHGIWEEYKKIEIMSGEEREEGKKCVWKA HHHHHHHHHHCCCCCHHHHHHEEEEECCCCCCCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA