Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
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Accession | NC_003901 |
Length | 4,096,345 |
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The map label for this gene is 21226594
Identifier: 21226594
GI number: 21226594
Start: 614025
End: 614654
Strand: Reverse
Name: 21226594
Synonym: MM_0492
Alternate gene names: NA
Gene position: 614654-614025 (Counterclockwise)
Preceding gene: 21226595
Following gene: 21226593
Centisome position: 15.0
GC content: 47.94
Gene sequence:
>630_bases GTGCTGGCTGTGGGTATCCTGCTCCTCTCAAGCATTGTCGCCGTTGATCTTCTGCTTGAAGACACTCCGGTGGTAATCCA GCTCGAAGGAGACACGTTCAAAGTTGTGGATATTCCGTATGTGTATACAGTAAAAGAAGCGTATATCCTTCTTTTCTCCG GGTTTACGGGAGGGCTGGCTCTGGCTCAGGTATTGCGGTCTTCAGGGCTTCAAGAACCCGTTTTTTCCTTGACTACCCCT TCAGCCCGGGTAAAAGTTCTTAATCTTGCAGTCGAGGACCCCCAGGAGAGGAGTTTTGAGGTCTCATCTGATTCTGCTGA GAATTTCCAGGGTGAAGGGTTCCAGCCTGATAGGGCTCATATAGACCCTACGGCTGTCCTTTTGCGGGTCCTTGAAGGGG ATGAAAAAAAAGCTGTCGAACTGATTGCGGCAAAAGGGGGAAGAATTCTCCAGAATGAACTCGTGAATTCCCTTGATTTT TCCAAAGCCAAAGTTTCCAGGGTCCTTATTAACCTGGAAAGGCGGGGCATAATAACAAAGAAAAAGTACGGGCTTACCAA CTGCATTTCGATAGCTAATGAGCTTAAGGATAATGCCGGAATGAAGGATAAAGGGGCTGAGGGGGAATAA
Upstream 100 bases:
>100_bases ACGTCTCGGGCTCAGGTCAAACTAAAATTATAACATTTGTTTCATACATACTGGAGGTAGTAAATGAGGTGGTAGTACGA TCCAAGAACGAAAAAAATTC
Downstream 100 bases:
>100_bases AGTGAGGAAAGGAACCTTGATTTGTGTTTTAGTTTTCTTTCTTATACTGCTATTGGGAATTTTCTGGTATGGAACAGGGC CTGATGTACATATCGCAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 209; Mature: 209
Protein sequence:
>209_residues MLAVGILLLSSIVAVDLLLEDTPVVIQLEGDTFKVVDIPYVYTVKEAYILLFSGFTGGLALAQVLRSSGLQEPVFSLTTP SARVKVLNLAVEDPQERSFEVSSDSAENFQGEGFQPDRAHIDPTAVLLRVLEGDEKKAVELIAAKGGRILQNELVNSLDF SKAKVSRVLINLERRGIITKKKYGLTNCISIANELKDNAGMKDKGAEGE
Sequences:
>Translated_209_residues MLAVGILLLSSIVAVDLLLEDTPVVIQLEGDTFKVVDIPYVYTVKEAYILLFSGFTGGLALAQVLRSSGLQEPVFSLTTP SARVKVLNLAVEDPQERSFEVSSDSAENFQGEGFQPDRAHIDPTAVLLRVLEGDEKKAVELIAAKGGRILQNELVNSLDF SKAKVSRVLINLERRGIITKKKYGLTNCISIANELKDNAGMKDKGAEGE >Mature_209_residues MLAVGILLLSSIVAVDLLLEDTPVVIQLEGDTFKVVDIPYVYTVKEAYILLFSGFTGGLALAQVLRSSGLQEPVFSLTTP SARVKVLNLAVEDPQERSFEVSSDSAENFQGEGFQPDRAHIDPTAVLLRVLEGDEKKAVELIAAKGGRILQNELVNSLDF SKAKVSRVLINLERRGIITKKKYGLTNCISIANELKDNAGMKDKGAEGE
Specific function: Unknown
COG id: COG2512
COG function: function code S; Uncharacterized membrane-associated protein/domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22675; Mature: 22675
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAVGILLLSSIVAVDLLLEDTPVVIQLEGDTFKVVDIPYVYTVKEAYILLFSGFTGGLA CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCEEEEHHHEEEEEECCCCHHHH LAQVLRSSGLQEPVFSLTTPSARVKVLNLAVEDPQERSFEVSSDSAENFQGEGFQPDRAH HHHHHHHCCCCCCHHCCCCCCCEEEEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCC IDPTAVLLRVLEGDEKKAVELIAAKGGRILQNELVNSLDFSKAKVSRVLINLERRGIITK CCHHHHHHHHHCCCCHHHHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEE KKYGLTNCISIANELKDNAGMKDKGAEGE HHCCHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MLAVGILLLSSIVAVDLLLEDTPVVIQLEGDTFKVVDIPYVYTVKEAYILLFSGFTGGLA CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCEEEEHHHEEEEEECCCCHHHH LAQVLRSSGLQEPVFSLTTPSARVKVLNLAVEDPQERSFEVSSDSAENFQGEGFQPDRAH HHHHHHHCCCCCCHHCCCCCCCEEEEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCC IDPTAVLLRVLEGDEKKAVELIAAKGGRILQNELVNSLDFSKAKVSRVLINLERRGIITK CCHHHHHHHHHCCCCHHHHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEE KKYGLTNCISIANELKDNAGMKDKGAEGE HHCCHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA