| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is cbiN [H]
Identifier: 21226566
GI number: 21226566
Start: 585209
End: 585550
Strand: Reverse
Name: cbiN [H]
Synonym: MM_0464
Alternate gene names: 21226566
Gene position: 585550-585209 (Counterclockwise)
Preceding gene: 21226567
Following gene: 21226565
Centisome position: 14.29
GC content: 44.44
Gene sequence:
>342_bases ATGAGCAGAAAACTGGAACTTATTGTACTCGCAATTTTCCTGGTCTTTGCAGTGCAGTTCGTTTATATGTCATCCACGTC AGACGCCGAATACGGAGGAGCTGACGGGGAAGCTGAAAATGTTATCAATGAGATCACCGGCGGAACCTATGAGCCAAATG CAGAACCTTTCTGGGAGCCTCCAAGTGGTGAAATTGAAAGCCTCCTCTTTGGCCTTCAGGCAGCTATCGGCGCAGGGATT ATCGGTTATTTCCTTGGCTACTACAAGGCAAAAGGCCGATACGAAAACGATCTTGGATATAAAGATAAAAAAAAGTCAGA AAGTGACAAACATTCCTTATAA
Upstream 100 bases:
>100_bases CCCTGCTCTTCAAGTACGTTGTCAACGTCAAGAGCGACATCCTGGTTGAAATGAAAGTCATTGAAGATGCTGTTGTAAGA AAACTGAGAGGTATTTCCGC
Downstream 100 bases:
>100_bases TTTCTTTTCTACCCCTTTACTTTCCTGCCTTCATTGCAGGAAAGTTTTTATCTTTTGCCTATTATTTTTAACCTTTGATT TTTGCTTAAATCCACAATCT
Product: cobalt transport protein CbiN
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 113; Mature: 112
Protein sequence:
>113_residues MSRKLELIVLAIFLVFAVQFVYMSSTSDAEYGGADGEAENVINEITGGTYEPNAEPFWEPPSGEIESLLFGLQAAIGAGI IGYFLGYYKAKGRYENDLGYKDKKKSESDKHSL
Sequences:
>Translated_113_residues MSRKLELIVLAIFLVFAVQFVYMSSTSDAEYGGADGEAENVINEITGGTYEPNAEPFWEPPSGEIESLLFGLQAAIGAGI IGYFLGYYKAKGRYENDLGYKDKKKSESDKHSL >Mature_112_residues SRKLELIVLAIFLVFAVQFVYMSSTSDAEYGGADGEAENVINEITGGTYEPNAEPFWEPPSGEIESLLFGLQAAIGAGII GYFLGYYKAKGRYENDLGYKDKKKSESDKHSL
Specific function: May be involved with cobalt transport in association with cobalamin biosynthesis [H]
COG id: COG1930
COG function: function code P; ABC-type cobalt transport system, periplasmic component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CbiN family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003705 [H]
Pfam domain/function: PF02553 CbiN [H]
EC number: NA
Molecular weight: Translated: 12428; Mature: 12297
Theoretical pI: Translated: 4.33; Mature: 4.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRKLELIVLAIFLVFAVQFVYMSSTSDAEYGGADGEAENVINEITGGTYEPNAEPFWEP CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC PSGEIESLLFGLQAAIGAGIIGYFLGYYKAKGRYENDLGYKDKKKSESDKHSL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SRKLELIVLAIFLVFAVQFVYMSSTSDAEYGGADGEAENVINEITGGTYEPNAEPFWEP CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC PSGEIESLLFGLQAAIGAGIIGYFLGYYKAKGRYENDLGYKDKKKSESDKHSL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA