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The map label for this gene is yidA [C]

Identifier: 21226558

GI number: 21226558

Start: 577527

End: 578207

Strand: Reverse

Name: yidA [C]

Synonym: MM_0456

Alternate gene names: 21226558

Gene position: 578207-577527 (Counterclockwise)

Preceding gene: 21226559

Following gene: 21226556

Centisome position: 14.12

GC content: 46.84

Gene sequence:

>681_bases
ATGAAATTTAAAGCTCTGGTCATTGACATTGACGGGACAATTACCTGCAAGAACAGGGAACTCCATCTCGGTGCTGTCAA
AAAAATGCGCACCCTTAATGTCCCTGTAGTTCTTGCTACAGGCAATATCCTGTGTTATGCAAGGACAGCATCAAGGCTCA
TCGGGCTTGGAGGAGCTGTGATTGCTGAAAATGGGGGAGCCGTTACTGTCCGCTATGATGTGAATGGCATTTTTGAAGGA
AGCCTGGAAGAATGTGAAAAAGCCTTTTCTTTCCTCTCTCAGCATTTCAAGCTCACAAAACTCGACCCCACGTACCGCAA
GACCGAGATCGCTCTCAGGCGGGACTTTGACCTTGAAGAAGCCAGATCCCTTCTCGAAACCCAGCCCTTTGACATCGAGC
TTGTTGATACGAAATATGCAATCCATATCAAAAGCATAAAAATCAATAAAGGGATAGGACTCCAGAAGCTTGCCGGTATG
ATGGGCTTTGAAGCCGAAGATTTTGTGGCGATAGGGGACTCGGCAAATGATGCTGAAATGTTTGAGGCGGCAGGCTTCGG
AATTGCTGTTGCGAACGGGGATGAAAGAGTAAAAGAGGTTGCCAATTACGTAACAGAGGCATCTTTTGGGGACGGGGCTG
TAGAAGCTATTGAATTCCTTGAATCCAACGGCTGGATATGA

Upstream 100 bases:

>100_bases
AATAAGATCTTATTCTGATCAACACGCCTGAAACCCAATCCACACTTAAAGAGCAATTAATGGGGGAAGCATTTTATTCC
TCCATCCCCATATTTTTTTA

Downstream 100 bases:

>100_bases
TGGCTGGATACAATGGCTGGATACGATGGCTGGATATGATAACCACAACGGACAGGCTTTCCCTGAGAAGCTCCTGATTA
ATTTTTTAATTCAGGATTAA

Product: phosphoglycolate phosphatase

Products: NA

Alternate protein names: PGP; PGPase

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MKFKALVIDIDGTITCKNRELHLGAVKKMRTLNVPVVLATGNILCYARTASRLIGLGGAVIAENGGAVTVRYDVNGIFEG
SLEECEKAFSFLSQHFKLTKLDPTYRKTEIALRRDFDLEEARSLLETQPFDIELVDTKYAIHIKSIKINKGIGLQKLAGM
MGFEAEDFVAIGDSANDAEMFEAAGFGIAVANGDERVKEVANYVTEASFGDGAVEAIEFLESNGWI

Sequences:

>Translated_226_residues
MKFKALVIDIDGTITCKNRELHLGAVKKMRTLNVPVVLATGNILCYARTASRLIGLGGAVIAENGGAVTVRYDVNGIFEG
SLEECEKAFSFLSQHFKLTKLDPTYRKTEIALRRDFDLEEARSLLETQPFDIELVDTKYAIHIKSIKINKGIGLQKLAGM
MGFEAEDFVAIGDSANDAEMFEAAGFGIAVANGDERVKEVANYVTEASFGDGAVEAIEFLESNGWI
>Mature_226_residues
MKFKALVIDIDGTITCKNRELHLGAVKKMRTLNVPVVLATGNILCYARTASRLIGLGGAVIAENGGAVTVRYDVNGIFEG
SLEECEKAFSFLSQHFKLTKLDPTYRKTEIALRRDFDLEEARSLLETQPFDIELVDTKYAIHIKSIKINKGIGLQKLAGM
MGFEAEDFVAIGDSANDAEMFEAAGFGIAVANGDERVKEVANYVTEASFGDGAVEAIEFLESNGWI

Specific function: Catalyzes the dephosphorylation of 2-phosphoglycolate

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal SPP-like hydrolase family

Homologues:

Organism=Escherichia coli, GI2367265, Length=127, Percent_Identity=36.2204724409449, Blast_Score=78, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PGP_METMA (Q8PZN6)

Other databases:

- EMBL:   AE008384
- RefSeq:   NP_632480.1
- ProteinModelPortal:   Q8PZN6
- SMR:   Q8PZN6
- GeneID:   1478798
- GenomeReviews:   AE008384_GR
- KEGG:   mma:MM_0456
- NMPDR:   fig|192952.1.peg.456
- HOGENOM:   HBG551920
- OMA:   LEEVICI
- ProtClustDB:   PRK01158
- BioCyc:   MMAZ192952:MM0456-MONOMER
- BRENDA:   3.1.3.18
- HAMAP:   MF_01419
- InterPro:   IPR023214
- InterPro:   IPR013200
- InterPro:   IPR006379
- InterPro:   IPR006382
- InterPro:   IPR006378
- Gene3D:   G3DSA:3.40.50.1000
- TIGRFAMs:   TIGR01484
- TIGRFAMs:   TIGR01487
- TIGRFAMs:   TIGR01482

Pfam domain/function: PF08282 Hydrolase_3; SSF56784 SSF56784

EC number: =3.1.3.18

Molecular weight: Translated: 24678; Mature: 24678

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: ACT_SITE 9-9 BINDING 150-150

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFKALVIDIDGTITCKNRELHLGAVKKMRTLNVPVVLATGNILCYARTASRLIGLGGAV
CCEEEEEEECCCEEEECCCEEEHHHHHHHEECCCCEEEEECCEEEEEEHHHHHHCCCCEE
IAENGGAVTVRYDVNGIFEGSLEECEKAFSFLSQHFKLTKLDPTYRKTEIALRRDFDLEE
EECCCCEEEEEEECCEEECCCHHHHHHHHHHHHHCCEEEECCCCCCCEEEEEECCCCHHH
ARSLLETQPFDIELVDTKYAIHIKSIKINKGIGLQKLAGMMGFEAEDFVAIGDSANDAEM
HHHHHHCCCCEEEEECCEEEEEEEEEEEECCCCHHHHHHHHCCCCCCEEEECCCCCCHHH
FEAAGFGIAVANGDERVKEVANYVTEASFGDGAVEAIEFLESNGWI
HHHCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKFKALVIDIDGTITCKNRELHLGAVKKMRTLNVPVVLATGNILCYARTASRLIGLGGAV
CCEEEEEEECCCEEEECCCEEEHHHHHHHEECCCCEEEEECCEEEEEEHHHHHHCCCCEE
IAENGGAVTVRYDVNGIFEGSLEECEKAFSFLSQHFKLTKLDPTYRKTEIALRRDFDLEE
EECCCCEEEEEEECCEEECCCHHHHHHHHHHHHHCCEEEECCCCCCCEEEEEECCCCHHH
ARSLLETQPFDIELVDTKYAIHIKSIKINKGIGLQKLAGMMGFEAEDFVAIGDSANDAEM
HHHHHHCCCCEEEEECCEEEEEEEEEEEECCCCHHHHHHHHCCCCCCEEEECCCCCCHHH
FEAAGFGIAVANGDERVKEVANYVTEASFGDGAVEAIEFLESNGWI
HHHCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12125824