| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is yitJ [H]
Identifier: 21226540
GI number: 21226540
Start: 557737
End: 558615
Strand: Reverse
Name: yitJ [H]
Synonym: MM_0438
Alternate gene names: 21226540
Gene position: 558615-557737 (Counterclockwise)
Preceding gene: 21226541
Following gene: 21226539
Centisome position: 13.64
GC content: 45.39
Gene sequence:
>879_bases ATGCTTTTTAATTTTCGTGAAAAACTGAATTCCAGAAAATTTCTGGTTACTGCTGAAGTTTCTCCTCCCAAGGGTACAAG ATTCTCAGCTTCTCTGGAAGATGCCAGCCAGTTAAAAGGTATTGCAGATGCTCTTAATGTTACGGATAATCAGTGTTCAA TTATGCACATGAGTTCTCTGGCTTTTAGCAAGCTTCTGCTTGATGAAGGGCATGAGCCTATCATGCAGCTTACCTGCCGG GACAGGAACAGAATAGGGCTCCAATCTGACCTTCTGGGAGCATATGCGCTTGGAATAAGAAACATCTGCCTTATGACCGG AGACTATCCTACCTGTGGAGACCATCCGGGCTCGAAGCCTGTTTATGACGTTGACTCCGTGCAGCTCATAGAACTCGTGA GAAAACTCGACACGGGCGTCGATTTTGCAGGAAACAAACTGGACGGGGGGACCTCATTTTGTGCGGGAGCAGTTTCGGGA ATAGACCCTGAAAAGACAATGCAGCTGATAAAGCTCCAGAAAAAGGTTAAATGCGGGGCGGATTTTATCCAGACGCAGGC TGTATACGATATAGGTATGTTCGAGGAGTTTATGGACGCAGTAAACTATCTTGAGGTGCCTGTAATTGCAGGTCTGATTC CTCTCAAGTCTCTGGGTATGGCTGAATTTATGAATAAAAACATCTCAGGGATTCACGTGCCCGAAGAAATTATGCTTCGA ATGAAAGATGCATCATCCCCTATGGAAGAAGGGCTTTTGATAGCTTCCGAAACCATAAAGGAGCTGACAAAACTTTCGCG GGGAATTCACGTTATGCCAATAGGGTCCCATAGAAACACAGCAAGATTGCTTTCTCTGGCGGGAATTTCTCAGAAGTGA
Upstream 100 bases:
>100_bases TTATACCACTTTTTATATAATAAGGGGCTTGATTTCTTTACGTCCTTATGCTCCACAGGAGCATGGATTTAAATAATTTC ATACCTAATATTCTTATTTA
Downstream 100 bases:
>100_bases TTAATTCAGAAAAACCGGCAAATAAAAACAGTAAAGTTAGCTGGCACTCTTTTTATGTTTATTTATTACCTGATACCTTT TTTCTCCTTTTTTTGGCAGG
Product: methylenetetrahydrofolate reductase
Products: NA
Alternate protein names: Homocysteine S-methyltransferase; S-methylmethionine:homocysteine methyltransferase; 5,10-methylenetetrahydrofolate reductase [H]
Number of amino acids: Translated: 292; Mature: 292
Protein sequence:
>292_residues MLFNFREKLNSRKFLVTAEVSPPKGTRFSASLEDASQLKGIADALNVTDNQCSIMHMSSLAFSKLLLDEGHEPIMQLTCR DRNRIGLQSDLLGAYALGIRNICLMTGDYPTCGDHPGSKPVYDVDSVQLIELVRKLDTGVDFAGNKLDGGTSFCAGAVSG IDPEKTMQLIKLQKKVKCGADFIQTQAVYDIGMFEEFMDAVNYLEVPVIAGLIPLKSLGMAEFMNKNISGIHVPEEIMLR MKDASSPMEEGLLIASETIKELTKLSRGIHVMPIGSHRNTARLLSLAGISQK
Sequences:
>Translated_292_residues MLFNFREKLNSRKFLVTAEVSPPKGTRFSASLEDASQLKGIADALNVTDNQCSIMHMSSLAFSKLLLDEGHEPIMQLTCR DRNRIGLQSDLLGAYALGIRNICLMTGDYPTCGDHPGSKPVYDVDSVQLIELVRKLDTGVDFAGNKLDGGTSFCAGAVSG IDPEKTMQLIKLQKKVKCGADFIQTQAVYDIGMFEEFMDAVNYLEVPVIAGLIPLKSLGMAEFMNKNISGIHVPEEIMLR MKDASSPMEEGLLIASETIKELTKLSRGIHVMPIGSHRNTARLLSLAGISQK >Mature_292_residues MLFNFREKLNSRKFLVTAEVSPPKGTRFSASLEDASQLKGIADALNVTDNQCSIMHMSSLAFSKLLLDEGHEPIMQLTCR DRNRIGLQSDLLGAYALGIRNICLMTGDYPTCGDHPGSKPVYDVDSVQLIELVRKLDTGVDFAGNKLDGGTSFCAGAVSG IDPEKTMQLIKLQKKVKCGADFIQTQAVYDIGMFEEFMDAVNYLEVPVIAGLIPLKSLGMAEFMNKNISGIHVPEEIMLR MKDASSPMEEGLLIASETIKELTKLSRGIHVMPIGSHRNTARLLSLAGISQK
Specific function: Methionine biosynthesis. [C]
COG id: COG0685
COG function: function code E; 5,10-methylenetetrahydrofolate reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Hcy-binding domain [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6325234, Length=228, Percent_Identity=27.1929824561404, Blast_Score=63, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003171 - InterPro: IPR003726 [H]
Pfam domain/function: PF02219 MTHFR; PF02574 S-methyl_trans [H]
EC number: =2.1.1.10; =1.5.1.20 [H]
Molecular weight: Translated: 31928; Mature: 31928
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFNFREKLNSRKFLVTAEVSPPKGTRFSASLEDASQLKGIADALNVTDNQCSIMHMSSL CCCCHHHHCCCCEEEEEEECCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCEEHHHHH AFSKLLLDEGHEPIMQLTCRDRNRIGLQSDLLGAYALGIRNICLMTGDYPTCGDHPGSKP HHHHHHHHCCCCHHHHEEECCCCCCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCC VYDVDSVQLIELVRKLDTGVDFAGNKLDGGTSFCAGAVSGIDPEKTMQLIKLQKKVKCGA CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH DFIQTQAVYDIGMFEEFMDAVNYLEVPVIAGLIPLKSLGMAEFMNKNISGIHVPEEIMLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHHH MKDASSPMEEGLLIASETIKELTKLSRGIHVMPIGSHRNTARLLSLAGISQK HHCCCCHHHHCEEHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCCCC >Mature Secondary Structure MLFNFREKLNSRKFLVTAEVSPPKGTRFSASLEDASQLKGIADALNVTDNQCSIMHMSSL CCCCHHHHCCCCEEEEEEECCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCEEHHHHH AFSKLLLDEGHEPIMQLTCRDRNRIGLQSDLLGAYALGIRNICLMTGDYPTCGDHPGSKP HHHHHHHHCCCCHHHHEEECCCCCCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCC VYDVDSVQLIELVRKLDTGVDFAGNKLDGGTSFCAGAVSGIDPEKTMQLIKLQKKVKCGA CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH DFIQTQAVYDIGMFEEFMDAVNYLEVPVIAGLIPLKSLGMAEFMNKNISGIHVPEEIMLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHHH MKDASSPMEEGLLIASETIKELTKLSRGIHVMPIGSHRNTARLLSLAGISQK HHCCCCHHHHCEEHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9353932; 9384377 [H]