Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 21226523

GI number: 21226523

Start: 535416

End: 536555

Strand: Reverse

Name: ydcM [C]

Synonym: MM_0421

Alternate gene names: 21226523

Gene position: 536555-535416 (Counterclockwise)

Preceding gene: 21226525

Following gene: 21226522

Centisome position: 13.1

GC content: 35.09

Gene sequence:

>1140_bases
ATGTTGTTAAAGAGCATAATACCTTGTATGGTGAAAGCGTTCAAATTTAGACTCTATCCTACAACTGCACAAGCTGTTCA
ATTGAATCAGCATATAGGTAGCTGTAGATTTGTCTACAATTGGGCGTTGGATCAAAAAATTAAAACTTACGAACAAACAG
GAAAATCAATTTCCAGATTTGACTTAAACAAATTAATTCCTACTCTAAAGGCTTCTAATGAATGGTTAGGTGAAGTCAAC
TCTCAATCATTACAGGGGATGACTAAGCAGGTTGAATCTGCTTTCACTCGGTTTTTTAGAGGGAAGACCGGATTCCCTAA
GTTTAAGTCTAAGAAAAATCCTATACAATCTTTCCCTGTACCTCAGCACTACTCCGTAGACTTTGAAAAAAACACTATTA
AGCTTCCTAAAATAGAACCAATTAAAGCAGTTTTTCACCGGAAGTTTGAAGGAGAACTTAAAACAGCTACGGTATCAAGG
ACTTGTAAAGGGCATTACTATATCAGTATCCTTGTTGAAGATGGTAAAGAACTTCCAGTAAAGGAAGCTTTCGCAGAATC
AACAACAATAGGAATTGATGTAGGTATCAAAGATTTTGCAGTTCTTTCTAATGGAGAAAAAATTGAAAATCCTAAGTACC
TGAAAAACTCTCTTAAGAGGCTTAAAGTTCTTCAGAAAAGAGTTTCGAAGAAACAAAAAGGCTCTAAGAATAGGGCAAAA
GCTAAACAAAGACTTGCTGTACTCCATGATAAAATAACTAATCAGAGAAATGATTTCCAGAACAAACTCTCTTTTAAACT
GATAAGCGAAAACCAAGCTGTAGCTCTGGAAACATTAAATGTTAAAGGCATGGTTAAGAATCATCATTTAGCACAGTCTA
TTAGTGATTCTGCATGGAGTAGTTTTGTAACAAAGTTAGAATATAAGGCTGAATGGTTCGGGAAAACTATCTTAAGAATC
GGACAATTTGAACCATCTTCCAAGCTCTGTAGTGTATGTGGATACCACAATAAAGAGCTTCAGTTAAAAGACAGGGAATG
GACTTGTCCTGACTGTAAAACAAAACATGATAGAGACATTAATGCCGCTATCAATATCAAGAAATTTGCTCTCGTAGATC
AAAATCTAATTGGATTGTAA

Upstream 100 bases:

>100_bases
GTATGACTTTTCGGTATTTGCAAACAAAAATAACATGGTACATTAACAAAAATTTTCTATGATTCCGTGTTTCATACTTC
ATATTTACTAAAAAGTACAT

Downstream 100 bases:

>100_bases
CACCTGCGGAACGTGGGGAAGAGCTTGGGGACTTGCCCTCAATAGAGGGAGGAATGAACCAAGAAGCCCATTAAATCTTT
AGATTTAGTGGGTAGTTCAC

Product: transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MLLKSIIPCMVKAFKFRLYPTTAQAVQLNQHIGSCRFVYNWALDQKIKTYEQTGKSISRFDLNKLIPTLKASNEWLGEVN
SQSLQGMTKQVESAFTRFFRGKTGFPKFKSKKNPIQSFPVPQHYSVDFEKNTIKLPKIEPIKAVFHRKFEGELKTATVSR
TCKGHYYISILVEDGKELPVKEAFAESTTIGIDVGIKDFAVLSNGEKIENPKYLKNSLKRLKVLQKRVSKKQKGSKNRAK
AKQRLAVLHDKITNQRNDFQNKLSFKLISENQAVALETLNVKGMVKNHHLAQSISDSAWSSFVTKLEYKAEWFGKTILRI
GQFEPSSKLCSVCGYHNKELQLKDREWTCPDCKTKHDRDINAAINIKKFALVDQNLIGL

Sequences:

>Translated_379_residues
MLLKSIIPCMVKAFKFRLYPTTAQAVQLNQHIGSCRFVYNWALDQKIKTYEQTGKSISRFDLNKLIPTLKASNEWLGEVN
SQSLQGMTKQVESAFTRFFRGKTGFPKFKSKKNPIQSFPVPQHYSVDFEKNTIKLPKIEPIKAVFHRKFEGELKTATVSR
TCKGHYYISILVEDGKELPVKEAFAESTTIGIDVGIKDFAVLSNGEKIENPKYLKNSLKRLKVLQKRVSKKQKGSKNRAK
AKQRLAVLHDKITNQRNDFQNKLSFKLISENQAVALETLNVKGMVKNHHLAQSISDSAWSSFVTKLEYKAEWFGKTILRI
GQFEPSSKLCSVCGYHNKELQLKDREWTCPDCKTKHDRDINAAINIKKFALVDQNLIGL
>Mature_379_residues
MLLKSIIPCMVKAFKFRLYPTTAQAVQLNQHIGSCRFVYNWALDQKIKTYEQTGKSISRFDLNKLIPTLKASNEWLGEVN
SQSLQGMTKQVESAFTRFFRGKTGFPKFKSKKNPIQSFPVPQHYSVDFEKNTIKLPKIEPIKAVFHRKFEGELKTATVSR
TCKGHYYISILVEDGKELPVKEAFAESTTIGIDVGIKDFAVLSNGEKIENPKYLKNSLKRLKVLQKRVSKKQKGSKNRAK
AKQRLAVLHDKITNQRNDFQNKLSFKLISENQAVALETLNVKGMVKNHHLAQSISDSAWSSFVTKLEYKAEWFGKTILRI
GQFEPSSKLCSVCGYHNKELQLKDREWTCPDCKTKHDRDINAAINIKKFALVDQNLIGL

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=356, Percent_Identity=30.8988764044944, Blast_Score=162, Evalue=4e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 43322; Mature: 43322

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLKSIIPCMVKAFKFRLYPTTAQAVQLNQHIGSCRFVYNWALDQKIKTYEQTGKSISRF
CCHHHHHHHHHHHHHHEECCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCHHHHH
DLNKLIPTLKASNEWLGEVNSQSLQGMTKQVESAFTRFFRGKTGFPKFKSKKNPIQSFPV
HHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PQHYSVDFEKNTIKLPKIEPIKAVFHRKFEGELKTATVSRTCKGHYYISILVEDGKELPV
CCCEEECCCCCEEECCCCCHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEEEECCCCCCH
KEAFAESTTIGIDVGIKDFAVLSNGEKIENPKYLKNSLKRLKVLQKRVSKKQKGSKNRAK
HHHHHCCCEEEEEECCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
AKQRLAVLHDKITNQRNDFQNKLSFKLISENQAVALETLNVKGMVKNHHLAQSISDSAWS
HHHHHHHHHHHHHCCHHHHHHHHEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
SFVTKLEYKAEWFGKTILRIGQFEPSSKLCSVCGYHNKELQLKDREWTCPDCKTKHDRDI
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC
NAAINIKKFALVDQNLIGL
CEEEEEEHHEEECCHHCCC
>Mature Secondary Structure
MLLKSIIPCMVKAFKFRLYPTTAQAVQLNQHIGSCRFVYNWALDQKIKTYEQTGKSISRF
CCHHHHHHHHHHHHHHEECCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCHHHHH
DLNKLIPTLKASNEWLGEVNSQSLQGMTKQVESAFTRFFRGKTGFPKFKSKKNPIQSFPV
HHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PQHYSVDFEKNTIKLPKIEPIKAVFHRKFEGELKTATVSRTCKGHYYISILVEDGKELPV
CCCEEECCCCCEEECCCCCHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEEEECCCCCCH
KEAFAESTTIGIDVGIKDFAVLSNGEKIENPKYLKNSLKRLKVLQKRVSKKQKGSKNRAK
HHHHHCCCEEEEEECCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
AKQRLAVLHDKITNQRNDFQNKLSFKLISENQAVALETLNVKGMVKNHHLAQSISDSAWS
HHHHHHHHHHHHHCCHHHHHHHHEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
SFVTKLEYKAEWFGKTILRIGQFEPSSKLCSVCGYHNKELQLKDREWTCPDCKTKHDRDI
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC
NAAINIKKFALVDQNLIGL
CEEEEEEHHEEECCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]