| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226513
Identifier: 21226513
GI number: 21226513
Start: 522693
End: 523706
Strand: Reverse
Name: 21226513
Synonym: MM_0411
Alternate gene names: NA
Gene position: 523706-522693 (Counterclockwise)
Preceding gene: 21226514
Following gene: 21226510
Centisome position: 12.78
GC content: 38.95
Gene sequence:
>1014_bases TTGGGGGGTAAAGAAATGGAAAGTTTAAAAAATATAAGCATAGGCGGGTTAAGGGAACTGAAGGAAAACGGATTCAAGGG GCTGAAAATCGGCGGCTTAAAGAATTTAATAGTTAAGCCGGAAAAGCCCGGAACTGAATGCACAGGCATTGCAGATCTTG AGGATCTGGTAAAAAAGAGAGAAGATATTAAAAAAGAAATAGAAAAACTGAACCGGGAGAAAAAGGGAATAGAAACCCGG ATTCATCTTATCCGGAAAACAGGAAAAGAGAAATGTGAAGAAATAACAGAATATCCCTGGAGAGAAGAAATATTTCCCCC TCTTCCGAGAAAAGAATATGTAAAAATACCTGAAACAATAGCCGAAACTCCTGAAGTTCAGGGAGATTCTGCACCTGGGG AAGGTTTTGAAATTTCAGAGGCAAAAGACAAAGGGATGAAAATAAAAGCCGAAGAGGCAAATAAAAAATCTGAAGATAAT ATATCTGAAAATGATGCATCTGAAGATAATGTATCTGAAATTAACACACCTGAAGATAATGTATCTGAAATTAACACACC TGAGGATAAGACACCTGAAAGCAGTACACCTGAAGAAAAGGTCTCACAAGATATGGCATCTGATATTATCCAGGCTGTGA CTGTAGATATTGAGGGAAAAGGAGACAGGATAAACGTAATCGGGAAAAAAGACGAAGATACGGTTTTTCCGCAGAAAGAA GATAAATCAAAAACCGTGTCCTCTTTCTCAGCAGTGAAATTAAGTGAAAATAAGATCCCGGATAGAGATTCCAGCACCAG TCCAGCTGAAATGAAAAATACTGAAAGTAAGAACAACCCTGCAGCATGCCTGCTTGGAGAAAATCTGATTGAAGAGCTAT TGAGCAGTGATGACCTGTGCCCTGAAGAAGAGCAGGGTTTTGTTAAATACCTGCAGGAACCGGAAATAGGAGAGCTGGTT AAAGAGTTAAAGGACATGAAGTCACTTCTAACCAGGGAAAAAATTGCATGTTAA
Upstream 100 bases:
>100_bases AAAAAAGGAGTTATGAAAAAAGGAGTTATGAAAAAGGAGTTTAAAGAGAATTAAAGAAAGCGGCAGAAAAGATTTTTGAA ATCGGGATTAATCAGAATTG
Downstream 100 bases:
>100_bases ACCCGGTGAAGAGCCGAAATTAATAAAAAAACAAAAGAGAAAAGATGACGGGAACAAACCCGGCACATAAATTTTAAAAA TATGTTCTTTGCAGGTATTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 337; Mature: 336
Protein sequence:
>337_residues MGGKEMESLKNISIGGLRELKENGFKGLKIGGLKNLIVKPEKPGTECTGIADLEDLVKKREDIKKEIEKLNREKKGIETR IHLIRKTGKEKCEEITEYPWREEIFPPLPRKEYVKIPETIAETPEVQGDSAPGEGFEISEAKDKGMKIKAEEANKKSEDN ISENDASEDNVSEINTPEDNVSEINTPEDKTPESSTPEEKVSQDMASDIIQAVTVDIEGKGDRINVIGKKDEDTVFPQKE DKSKTVSSFSAVKLSENKIPDRDSSTSPAEMKNTESKNNPAACLLGENLIEELLSSDDLCPEEEQGFVKYLQEPEIGELV KELKDMKSLLTREKIAC
Sequences:
>Translated_337_residues MGGKEMESLKNISIGGLRELKENGFKGLKIGGLKNLIVKPEKPGTECTGIADLEDLVKKREDIKKEIEKLNREKKGIETR IHLIRKTGKEKCEEITEYPWREEIFPPLPRKEYVKIPETIAETPEVQGDSAPGEGFEISEAKDKGMKIKAEEANKKSEDN ISENDASEDNVSEINTPEDNVSEINTPEDKTPESSTPEEKVSQDMASDIIQAVTVDIEGKGDRINVIGKKDEDTVFPQKE DKSKTVSSFSAVKLSENKIPDRDSSTSPAEMKNTESKNNPAACLLGENLIEELLSSDDLCPEEEQGFVKYLQEPEIGELV KELKDMKSLLTREKIAC >Mature_336_residues GGKEMESLKNISIGGLRELKENGFKGLKIGGLKNLIVKPEKPGTECTGIADLEDLVKKREDIKKEIEKLNREKKGIETRI HLIRKTGKEKCEEITEYPWREEIFPPLPRKEYVKIPETIAETPEVQGDSAPGEGFEISEAKDKGMKIKAEEANKKSEDNI SENDASEDNVSEINTPEDNVSEINTPEDKTPESSTPEEKVSQDMASDIIQAVTVDIEGKGDRINVIGKKDEDTVFPQKED KSKTVSSFSAVKLSENKIPDRDSSTSPAEMKNTESKNNPAACLLGENLIEELLSSDDLCPEEEQGFVKYLQEPEIGELVK ELKDMKSLLTREKIAC
Specific function: Unknown
COG id: COG5295
COG function: function code UW; Autotransporter adhesin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37553; Mature: 37421
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGGKEMESLKNISIGGLRELKENGFKGLKIGGLKNLIVKPEKPGTECTGIADLEDLVKKR CCCHHHHHHHCCCCHHHHHHHHCCCCCEEECCCHHHEECCCCCCCCCCCHHHHHHHHHHH EDIKKEIEKLNREKKGIETRIHLIRKTGKEKCEEITEYPWREEIFPPLPRKEYVKIPETI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHCCCHHH AETPEVQGDSAPGEGFEISEAKDKGMKIKAEEANKKSEDNISENDASEDNVSEINTPEDN HCCCCCCCCCCCCCCCCCCCHHCCCCEEEHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCH VSEINTPEDKTPESSTPEEKVSQDMASDIIQAVTVDIEGKGDRINVIGKKDEDTVFPQKE HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCEEEEECCCCCCCCCCCCC DKSKTVSSFSAVKLSENKIPDRDSSTSPAEMKNTESKNNPAACLLGENLIEELLSSDDLC CHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHCCCCCCCCCEEHHHHHHHHHHHCCCCCC PEEEQGFVKYLQEPEIGELVKELKDMKSLLTREKIAC CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GGKEMESLKNISIGGLRELKENGFKGLKIGGLKNLIVKPEKPGTECTGIADLEDLVKKR CCHHHHHHHCCCCHHHHHHHHCCCCCEEECCCHHHEECCCCCCCCCCCHHHHHHHHHHH EDIKKEIEKLNREKKGIETRIHLIRKTGKEKCEEITEYPWREEIFPPLPRKEYVKIPETI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHCCCHHH AETPEVQGDSAPGEGFEISEAKDKGMKIKAEEANKKSEDNISENDASEDNVSEINTPEDN HCCCCCCCCCCCCCCCCCCCHHCCCCEEEHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCH VSEINTPEDKTPESSTPEEKVSQDMASDIIQAVTVDIEGKGDRINVIGKKDEDTVFPQKE HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCEEEEECCCCCCCCCCCCC DKSKTVSSFSAVKLSENKIPDRDSSTSPAEMKNTESKNNPAACLLGENLIEELLSSDDLC CHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHCCCCCCCCCEEHHHHHHHHHHHCCCCCC PEEEQGFVKYLQEPEIGELVKELKDMKSLLTREKIAC CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA