Click here to switch to the map view.

The map label for this gene is yncE [C]

Identifier: 21226507

GI number: 21226507

Start: 516267

End: 517700

Strand: Reverse

Name: yncE [C]

Synonym: MM_0405

Alternate gene names: 21226507

Gene position: 517700-516267 (Counterclockwise)

Preceding gene: 21226508

Following gene: 21226506

Centisome position: 12.64

GC content: 41.77

Gene sequence:

>1434_bases
ATGGAAGAAATAACGTATGATAAAACATATCGAGAGCATACTCTCATAAGAGTTTTGGGAATGACTTCACTTACGATTTT
AATATTGGCTGGTGTAGCAGGTGCGGCTCCATTTGCATATGTGACAAATCTGGGGGATTATAATCAGAGAGGTTATTATT
ACGACATGAATTATAATGGTACTGTTCCTACTCCTACTGTCGCTGTAATTGACACAGCAACTAACAATGTTACAGCCAGA
GTGCCTCTTGGAGGAGGGTGGCCTGTAGGAATTGTGGTCAACCCTGCAGGAACAAAGTTATATGTAGCGTCCGCAGCTAT
AGACGTTTGCACTGTTTATGTAATTGATACAGCTGCAAATACGGTTAGCGCCAAAGTGAATATAGGAAGCAGTTATCCTT
CGGGAATTACAGTTAACCCTGCAGGAACAAGAGTTTATGTGCCGAAGCAGCGTGACAACACAGATATCTCTGTAATTAAC
ACAGCAACAAATACCTTAATGGCACCGATTATTGTGGAGCAAAGTACTCATAATGTTGCAATCACACCAGATGGAAAAAA
AATCTATGTCACGAACTTTCGCGGCAACATTACTTCTGTAATTGACGCGGCTACAAACAAAGTTACAGGCAGCGCGTCTG
TAGGAGACTCCCCTTGTGGCATTGCAGTCACACCGGACGGAAAAAAAGTATACATAACTAACTATAACAGCAGCACTGTC
TCTGTAATTAATACAGCCACGGATAATGTAATAACCACTGTGTCTGTAGGAAGCTTACCTGACCGTGTTGCAGTCACTTC
TGATGGAAACAAAGTATATGTAGCTGGCAGCAGCACTGTCTCTGTAATTGATACAGCCACGGATACTGTAATAGCCACTG
TGCCTGTAGGAACTTCTTCTCGTGAAATTGTAATTAGTCCAGATGGAAGTAAGGTATATTTAGGGAACTTCTACAATAAA
AGTGTCACTGTAATTAATACAAAAACAAACACTGTCACGGCCACAGTGCCTGTGGGAGAATGGCCCCTGGGAATCGCAGT
CACACCGGACGGAAAAAAGGTATATGTGACAAACGCCGAAAGCGACAATGTCTCAGTGATTGACACAGCCACAAACACTG
TTACGGCTACGGTAAATGCAGGAATCTATCCTACTGGGATTGTAATTGTGCCTCTTAAGGATTCCAATATGACTGCCCAA
AGTACAGGGACAACATCCAATGCAACTGAAGACATAGGGGTTAAAGAAACGAACTTGCCATCTGAAGAAATAAACACTGT
CGAACTCAATAATTCAAAAAAGAATGATTCAGAATCCGATAATGGCAGTAGCTCAAATGAAAACGAATCAAGTAAAAATA
ACTCTACTCCAGGTTTTGGACTATTGGGAAGCTTGACCTGCCTGTATGGTGGATGGAAGTTAAGGAAGAAGTAA

Upstream 100 bases:

>100_bases
ATCGAAACCTCCTTATTTATAGGGTGCTGGTATAAACTAAATCTAGGAGAGGGTCGCTGATGTTGTTACTTTTTGATGAG
TCCATAAGCTGGGATTTAAA

Downstream 100 bases:

>100_bases
GTGCCAAAATGGGTTTTGCTGTCGTTAGCAACAACACTACTTCTGTAATTGATGCGACTACAAACACTGTTACAGCCACA
GTGCCTGTAGGACTTGCTCA

Product: putative surface layer protein

Products: NA

Alternate protein names: 40-Residue YVTN Family Beta-Propeller Repeat Protein; Surface Antigen Gene; Surface Layer Protein; YVTN Family Beta-Propeller Repeat Protein; Cell Surface Protein; 40-Residue Yvtn Family Beta-Propeller Repeat Protein; PE-PGRS Family Protein; Vegetative Incompatibility; Beta-Propeller Fold Protein; Surface Antigen; Yvtn Beta-Propeller Repeat Family Protein; Beta-Propeller Repeat-Containing Protein; Triple Helix Repeat-Containing Collagen; Hemagglutinin-Related Protein; YVTN Family Beta-Propeller Repeat-Containing Protein; WD40 Domain-Containing Protein; Outer Membrane Protein; Alpha-1 2-Mannosidase; Glycine-Rich Cell Wall Protein; YVTN Beta-Propeller Repeat Family Protein; PE_PGRS Family Protein; Signal Peptide; Beta-Propeller Repeat Protein YVTN Family; SGL Domain-Containing Protein; LOW QUALITY PROTEIN Surface Antigen Protein; Surface Antigen-Like Protein; IPT/TIG Domain Protein; Serine/Threonine Protein Kinase; Yvtn Beta-Propeller Repeat-Containing Protein; Secreted Protein; Transmembrane Protein; Alkaline Serine Protease; YVTN Family Beta-Propeller Repeat Family Protein

Number of amino acids: Translated: 477; Mature: 477

Protein sequence:

>477_residues
MEEITYDKTYREHTLIRVLGMTSLTILILAGVAGAAPFAYVTNLGDYNQRGYYYDMNYNGTVPTPTVAVIDTATNNVTAR
VPLGGGWPVGIVVNPAGTKLYVASAAIDVCTVYVIDTAANTVSAKVNIGSSYPSGITVNPAGTRVYVPKQRDNTDISVIN
TATNTLMAPIIVEQSTHNVAITPDGKKIYVTNFRGNITSVIDAATNKVTGSASVGDSPCGIAVTPDGKKVYITNYNSSTV
SVINTATDNVITTVSVGSLPDRVAVTSDGNKVYVAGSSTVSVIDTATDTVIATVPVGTSSREIVISPDGSKVYLGNFYNK
SVTVINTKTNTVTATVPVGEWPLGIAVTPDGKKVYVTNAESDNVSVIDTATNTVTATVNAGIYPTGIVIVPLKDSNMTAQ
STGTTSNATEDIGVKETNLPSEEINTVELNNSKKNDSESDNGSSSNENESSKNNSTPGFGLLGSLTCLYGGWKLRKK

Sequences:

>Translated_477_residues
MEEITYDKTYREHTLIRVLGMTSLTILILAGVAGAAPFAYVTNLGDYNQRGYYYDMNYNGTVPTPTVAVIDTATNNVTAR
VPLGGGWPVGIVVNPAGTKLYVASAAIDVCTVYVIDTAANTVSAKVNIGSSYPSGITVNPAGTRVYVPKQRDNTDISVIN
TATNTLMAPIIVEQSTHNVAITPDGKKIYVTNFRGNITSVIDAATNKVTGSASVGDSPCGIAVTPDGKKVYITNYNSSTV
SVINTATDNVITTVSVGSLPDRVAVTSDGNKVYVAGSSTVSVIDTATDTVIATVPVGTSSREIVISPDGSKVYLGNFYNK
SVTVINTKTNTVTATVPVGEWPLGIAVTPDGKKVYVTNAESDNVSVIDTATNTVTATVNAGIYPTGIVIVPLKDSNMTAQ
STGTTSNATEDIGVKETNLPSEEINTVELNNSKKNDSESDNGSSSNENESSKNNSTPGFGLLGSLTCLYGGWKLRKK
>Mature_477_residues
MEEITYDKTYREHTLIRVLGMTSLTILILAGVAGAAPFAYVTNLGDYNQRGYYYDMNYNGTVPTPTVAVIDTATNNVTAR
VPLGGGWPVGIVVNPAGTKLYVASAAIDVCTVYVIDTAANTVSAKVNIGSSYPSGITVNPAGTRVYVPKQRDNTDISVIN
TATNTLMAPIIVEQSTHNVAITPDGKKIYVTNFRGNITSVIDAATNKVTGSASVGDSPCGIAVTPDGKKVYITNYNSSTV
SVINTATDNVITTVSVGSLPDRVAVTSDGNKVYVAGSSTVSVIDTATDTVIATVPVGTSSREIVISPDGSKVYLGNFYNK
SVTVINTKTNTVTATVPVGEWPLGIAVTPDGKKVYVTNAESDNVSVIDTATNTVTATVNAGIYPTGIVIVPLKDSNMTAQ
STGTTSNATEDIGVKETNLPSEEINTVELNNSKKNDSESDNGSSSNENESSKNNSTPGFGLLGSLTCLYGGWKLRKK

Specific function: Unknown

COG id: COG3391

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49865; Mature: 49865

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEITYDKTYREHTLIRVLGMTSLTILILAGVAGAAPFAYVTNLGDYNQRGYYYDMNYNG
CCCCCCCCCHHHEEEEEEECHHHHEEHHHHCCCCCCCEEEEECCCCCCCCCEEEEECCCC
TVPTPTVAVIDTATNNVTARVPLGGGWPVGIVVNPAGTKLYVASAAIDVCTVYVIDTAAN
CCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEEEEEEEEEEECCCC
TVSAKVNIGSSYPSGITVNPAGTRVYVPKQRDNTDISVINTATNTLMAPIIVEQSTHNVA
EEEEEEEECCCCCCCEEECCCCCEEEEECCCCCCCEEEEECCCCCEEEEEEEECCCCEEE
ITPDGKKIYVTNFRGNITSVIDAATNKVTGSASVGDSPCGIAVTPDGKKVYITNYNSSTV
ECCCCCEEEEEECCCCCHHEEHHHCCCEECCCCCCCCCCEEEECCCCCEEEEEECCCCEE
SVINTATDNVITTVSVGSLPDRVAVTSDGNKVYVAGSSTVSVIDTATDTVIATVPVGTSS
EEEEECCCCEEEEEEECCCCCEEEEECCCCEEEEECCCEEEEEECCCCEEEEEEECCCCC
REIVISPDGSKVYLGNFYNKSVTVINTKTNTVTATVPVGEWPLGIAVTPDGKKVYVTNAE
CEEEECCCCCEEEEEEECCCEEEEEEECCCEEEEEEECCCCCEEEEECCCCCEEEEECCC
SDNVSVIDTATNTVTATVNAGIYPTGIVIVPLKDSNMTAQSTGTTSNATEDIGVKETNLP
CCCEEEEEECCCEEEEEEECCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCC
SEEINTVELNNSKKNDSESDNGSSSNENESSKNNSTPGFGLLGSLTCLYGGWKLRKK
HHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEECCEEEECC
>Mature Secondary Structure
MEEITYDKTYREHTLIRVLGMTSLTILILAGVAGAAPFAYVTNLGDYNQRGYYYDMNYNG
CCCCCCCCCHHHEEEEEEECHHHHEEHHHHCCCCCCCEEEEECCCCCCCCCEEEEECCCC
TVPTPTVAVIDTATNNVTARVPLGGGWPVGIVVNPAGTKLYVASAAIDVCTVYVIDTAAN
CCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEEEEEEEEEEECCCC
TVSAKVNIGSSYPSGITVNPAGTRVYVPKQRDNTDISVINTATNTLMAPIIVEQSTHNVA
EEEEEEEECCCCCCCEEECCCCCEEEEECCCCCCCEEEEECCCCCEEEEEEEECCCCEEE
ITPDGKKIYVTNFRGNITSVIDAATNKVTGSASVGDSPCGIAVTPDGKKVYITNYNSSTV
ECCCCCEEEEEECCCCCHHEEHHHCCCEECCCCCCCCCCEEEECCCCCEEEEEECCCCEE
SVINTATDNVITTVSVGSLPDRVAVTSDGNKVYVAGSSTVSVIDTATDTVIATVPVGTSS
EEEEECCCCEEEEEEECCCCCEEEEECCCCEEEEECCCEEEEEECCCCEEEEEEECCCCC
REIVISPDGSKVYLGNFYNKSVTVINTKTNTVTATVPVGEWPLGIAVTPDGKKVYVTNAE
CEEEECCCCCEEEEEEECCCEEEEEEECCCEEEEEEECCCCCEEEEECCCCCEEEEECCC
SDNVSVIDTATNTVTATVNAGIYPTGIVIVPLKDSNMTAQSTGTTSNATEDIGVKETNLP
CCCEEEEEECCCEEEEEEECCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCC
SEEINTVELNNSKKNDSESDNGSSSNENESSKNNSTPGFGLLGSLTCLYGGWKLRKK
HHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEECCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA