| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226502
Identifier: 21226502
GI number: 21226502
Start: 512752
End: 513153
Strand: Reverse
Name: 21226502
Synonym: MM_0400
Alternate gene names: NA
Gene position: 513153-512752 (Counterclockwise)
Preceding gene: 21226503
Following gene: 21226500
Centisome position: 12.53
GC content: 36.82
Gene sequence:
>402_bases ATGACTACGAACTATAGCATAGATTGCAACACGGGTTCTATGGGAAATAAATATTACATTATGGTAGACAAAGATAATCG GGATATAAGACGCGAATTGAGAAAAGGGATGGAAGAAGAGAATAAAGATTGGATTATATCTTCTTCTGCTACTGGCATTC GAAAAGGACATTCTTACGTAATCGCGGTATCCGAACAGGCTGTCAATGATGAAAAGTTTCTTTCGATACTGAATAAATAT GACACTCAGGTGAAAAAGTTCGTCTGGTGCTATATTCGCTTTGAAAAGCCGGACGGGTTCAGGTATTGGATTCCGGAGGA AGATGCAGTCAAAATGAAAAACGAGCTCGAAAATAATGAAAGTATTATTACCGTATCTATTGACTATATTAATGATCAGT AA
Upstream 100 bases:
>100_bases TAACAACGAGCTTAAGGTGGGTGGGATGAACATCCGATTTGAATACGGAACTTCCTAATAGAAAGTTAAACATGTTCTTG AAAACTATAACAACTATAAC
Downstream 100 bases:
>100_bases ATCAGATACATATTTTTAAAAACGTTTCAAGCCGTGACCCTCTTCACTCCCATTGTAATAAAAAAGATAGCCAGTTCTAT TTAAAAACTGGATTTTATAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 133; Mature: 132
Protein sequence:
>133_residues MTTNYSIDCNTGSMGNKYYIMVDKDNRDIRRELRKGMEEENKDWIISSSATGIRKGHSYVIAVSEQAVNDEKFLSILNKY DTQVKKFVWCYIRFEKPDGFRYWIPEEDAVKMKNELENNESIITVSIDYINDQ
Sequences:
>Translated_133_residues MTTNYSIDCNTGSMGNKYYIMVDKDNRDIRRELRKGMEEENKDWIISSSATGIRKGHSYVIAVSEQAVNDEKFLSILNKY DTQVKKFVWCYIRFEKPDGFRYWIPEEDAVKMKNELENNESIITVSIDYINDQ >Mature_132_residues TTNYSIDCNTGSMGNKYYIMVDKDNRDIRRELRKGMEEENKDWIISSSATGIRKGHSYVIAVSEQAVNDEKFLSILNKYD TQVKKFVWCYIRFEKPDGFRYWIPEEDAVKMKNELENNESIITVSIDYINDQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0228 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008887 [H]
Pfam domain/function: PF05727 UPF0228 [H]
EC number: NA
Molecular weight: Translated: 15685; Mature: 15554
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTNYSIDCNTGSMGNKYYIMVDKDNRDIRRELRKGMEEENKDWIISSSATGIRKGHSYV CCCCEEEECCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEE IAVSEQAVNDEKFLSILNKYDTQVKKFVWCYIRFEKPDGFRYWIPEEDAVKMKNELENNE EEECCCCCCHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCEEECCCCHHHHHHHHCCCCC SIITVSIDYINDQ CEEEEEEEEECCC >Mature Secondary Structure TTNYSIDCNTGSMGNKYYIMVDKDNRDIRRELRKGMEEENKDWIISSSATGIRKGHSYV CCCEEEECCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEE IAVSEQAVNDEKFLSILNKYDTQVKKFVWCYIRFEKPDGFRYWIPEEDAVKMKNELENNE EEECCCCCCHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCEEECCCCHHHHHHHHCCCCC SIITVSIDYINDQ CEEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11932238 [H]