Click here to switch to the map view.

The map label for this gene is nirB [C]

Identifier: 21226464

GI number: 21226464

Start: 469092

End: 469751

Strand: Direct

Name: nirB [C]

Synonym: MM_0362

Alternate gene names: 21226464

Gene position: 469092-469751 (Clockwise)

Preceding gene: 21226462

Following gene: 21226465

Centisome position: 11.45

GC content: 49.24

Gene sequence:

>660_bases
GTGAAAGACAATTTACCGGAAAAAGGCGCAATCGTTCAGAGAGACCGTGAGACATACACAATAGCTCCCCACCTCCCGGG
AGGAATCGTAGACCCCGATACTCTTATCAAAATCGGTGAAGTTGCGAAAAAGTACGGGGCAGCTGCCCTGAAAGCGACCT
CTGCACAGAGGATTGCAATAGTAGGCCTGAAAGAAGAGGACCTGGATAATGCCTGGGCTGACCTTGGAATAAAACCCGGT
GCAGCCATAGGGCTCTGTGTTAGAAGCATTAAATTCTGTCCCGGGACAACTTTCTGCAAGCAGGCTAAACAGGATGCTGT
AGGCCTGGGACTCAAACTGGACGAGAAATATCACGGGATGTCCATGCCTTCAAAATTGAAAATCGGCGTTAGCGGTTGTC
CGAACTCATGCGCAGAACCTGCTATTAAGGACATAGGGTTGATGGGCACTGCGAAGGGATACAACCTGATGGTAGGCGGC
TCTGCTGCTGCAGTCCCCAGGCTTGCCCAGGTCGTAGCAAAAGACCTTTCCGAAGACGATGCCCTTGAAATCGTGGACAG
AATCCTTAATTTCTATAAAAATTCCGGCACAAAAAAGAGGCTTGGAAGGTTTATTGAAGATATGGGTCTGGACGAGTTCA
AAAAGCAGGTTGGGCTGTAA

Upstream 100 bases:

>100_bases
TTGAGCGAAAGCCTGGAGACCTGCCTGATTTATTGTAAGCTGCCTGGCAGGTCAGCACACTGTAAAACTTCATTATACAT
CCAAGGAGAAAGGATCAACC

Downstream 100 bases:

>100_bases
CTTACTGGCAAATCATTTGATTTGAAGTGGAGTAAAGGGCTCTGATATCATTGTTTGGCCGCTGGCAACTGTGTAATTTG
TTTCCTCCATAATCTCAAGC

Product: sulfite reductase, assimilatory-type

Products: 3 NAD(P)+; NH4OH; H2O [C]

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MKDNLPEKGAIVQRDRETYTIAPHLPGGIVDPDTLIKIGEVAKKYGAAALKATSAQRIAIVGLKEEDLDNAWADLGIKPG
AAIGLCVRSIKFCPGTTFCKQAKQDAVGLGLKLDEKYHGMSMPSKLKIGVSGCPNSCAEPAIKDIGLMGTAKGYNLMVGG
SAAAVPRLAQVVAKDLSEDDALEIVDRILNFYKNSGTKKRLGRFIEDMGLDEFKKQVGL

Sequences:

>Translated_219_residues
MKDNLPEKGAIVQRDRETYTIAPHLPGGIVDPDTLIKIGEVAKKYGAAALKATSAQRIAIVGLKEEDLDNAWADLGIKPG
AAIGLCVRSIKFCPGTTFCKQAKQDAVGLGLKLDEKYHGMSMPSKLKIGVSGCPNSCAEPAIKDIGLMGTAKGYNLMVGG
SAAAVPRLAQVVAKDLSEDDALEIVDRILNFYKNSGTKKRLGRFIEDMGLDEFKKQVGL
>Mature_219_residues
MKDNLPEKGAIVQRDRETYTIAPHLPGGIVDPDTLIKIGEVAKKYGAAALKATSAQRIAIVGLKEEDLDNAWADLGIKPG
AAIGLCVRSIKFCPGTTFCKQAKQDAVGLGLKLDEKYHGMSMPSKLKIGVSGCPNSCAEPAIKDIGLMGTAKGYNLMVGG
SAAAVPRLAQVVAKDLSEDDALEIVDRILNFYKNSGTKKRLGRFIEDMGLDEFKKQVGL

Specific function: This enzyme catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate [H]

COG id: COG1251

COG function: function code C; NAD(P)H-nitrite reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789765, Length=211, Percent_Identity=35.5450236966825, Blast_Score=144, Evalue=6e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005117
- InterPro:   IPR006067
- InterPro:   IPR006066
- InterPro:   IPR017220 [H]

Pfam domain/function: PF01077 NIR_SIR; PF03460 NIR_SIR_ferr [H]

EC number: 1.7.1.4 [C]

Molecular weight: Translated: 23360; Mature: 23360

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS00365 NIR_SIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDNLPEKGAIVQRDRETYTIAPHLPGGIVDPDTLIKIGEVAKKYGAAALKATSAQRIAI
CCCCCCCCCCEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
VGLKEEDLDNAWADLGIKPGAAIGLCVRSIKFCPGTTFCKQAKQDAVGLGLKLDEKYHGM
EECCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEECCCCCCC
SMPSKLKIGVSGCPNSCAEPAIKDIGLMGTAKGYNLMVGGSAAAVPRLAQVVAKDLSEDD
CCCCEEEEECCCCCCHHHHHHHHHHCCEECCCCCEEEECCCHHHHHHHHHHHHHHCCCCH
ALEIVDRILNFYKNSGTKKRLGRFIEDMGLDEFKKQVGL
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure
MKDNLPEKGAIVQRDRETYTIAPHLPGGIVDPDTLIKIGEVAKKYGAAALKATSAQRIAI
CCCCCCCCCCEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
VGLKEEDLDNAWADLGIKPGAAIGLCVRSIKFCPGTTFCKQAKQDAVGLGLKLDEKYHGM
EECCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEECCCCCCC
SMPSKLKIGVSGCPNSCAEPAIKDIGLMGTAKGYNLMVGGSAAAVPRLAQVVAKDLSEDD
CCCCEEEEECCCCCCHHHHHHHHHHCCEECCCCCEEEECCCHHHHHHHHHHHHHHCCCCH
ALEIVDRILNFYKNSGTKKRLGRFIEDMGLDEFKKQVGL
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: FAD; NAD+; NADH; Siroheme [C]

Metal ions: Iron [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): 0.4 {NO2-}} 0.005 {NO2-}} 0.016 {NADH}} 5.3 {hydroxylamine}} [C]

Substrates: 3 NAD(P)H; nitrite [C]

Specific reaction: 3 NAD(P)H + nitrite = 3 NAD(P)+ + NH4OH + H2O [C]

General reaction: Redox reaction [C]

Inhibitor: 1, 10-Phenanthroline; 2, 2'-Bipyridine; Arsenite; CN-; NAD+; NADP+; NaN3; p-Chloromercuribenzoate; SO32- [C]

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1911781 [H]