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The map label for this gene is cycK [H]

Identifier: 21226241

GI number: 21226241

Start: 174138

End: 175199

Strand: Reverse

Name: cycK [H]

Synonym: MM_0139

Alternate gene names: 21226241

Gene position: 175199-174138 (Counterclockwise)

Preceding gene: 21226242

Following gene: 21226240

Centisome position: 4.28

GC content: 46.52

Gene sequence:

>1062_bases
ATGAATACTGGAATGGGGCTCATCTGGATAGCCGGAGCTTCAGGGCTGCTTGCTTTTTTTACTTCCCTGCTTTACTTCTT
GAAGCAGGATAAAAAATTTATGATCCTCTCACAAAAACTGGAATTTGCAGCAGGAGCAGGAATAATCATTGCGATATCCC
TGCTTGTTTATCACTTAGTTGGGGTTGATACCGAATACGGTTATGTTTTTCAACACTCCAGCGCTGACCTCGCCTTGAAG
TACAGGTTCTCAGCACTCTGGGCAGGTCAGGAAGGGTCTTTTCTGGTCTGGACAGGCTTTATCTTCATAATGATTGCAGC
CACGCGTTTCACACGAGCAGGAAAAGTACTCGGAGAGACGGAGCTTTTTGCACTTATGAAGTCAGTTTCCCTATTTGTAG
CCTCCGCATTTTTGCTTCTTCTGGTATTGAAAAATCCTTTCTCAATGTATTATCTAACATGGGCAGGAGTGCCTGAAGTT
ACAAACTGGAATCTGTTTGCAGAGCCTTTTGTTGCTTCTTACGGACAGGGCATGAACCCTTTGCTCAGGAACTTCTGGAT
GGCCATACACCCCCCTCTTCTGTTCCTTGGCTATGCAGCTTTTACCCTTCCTTTTGCTGCTGCAATTTCAGGTCTTATCC
TCAGGGACAGCAGGTGGCAGGAATTTGCAACCGGATGGATGCGTGTTTCCTGGTTCTTCCTTACAATGGGGATAGGTTCT
GGAGCCTTCTGGGCGTATGAGGTACTTGGCTGGGGTGCCTGGTACTGGACCTGGGATCCGGTCGAGACTTCCTCGCTTAT
CCCCTGGCTTACAGCAACGGCTTATCTGCATGCAAAATTACGGTTCCGCAATGATGAGTACGGCTTCATGCTCCCTATGC
TTGCCCTTGTTTCTTTTATTCTGGTAATTTTCTCGACTTTTGTCACAAGAAGCGGGCTGTGGGTATCTGTCCATTCATGG
CAGGACTTCACAGCAGAAGGGATGGTTATTGCTCTATTCCTGATTATTATAGCGGGTTCAAGCACAATTCTTCTGGTCAG
AAAGTATTTCAGTGAGGATTAA

Upstream 100 bases:

>100_bases
AGAGCTTCCTGAGGAAATAAAAACGAGAACTGAAAAATGAAATTAAATAGAACCGGGCTGGTAAAACAATGCATGACACG
GGTGTGCAGATGGTGATTGT

Downstream 100 bases:

>100_bases
ATAAGCAGCCCAGGTAATGTATTGTGAGGAAATTCTCTGGGAAGCAAGTTCACTTGAAAATAAAGGAGATTAATTGAGAA
GTGAAGCATATTAATCGAAA

Product: cytochrome c-type biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MNTGMGLIWIAGASGLLAFFTSLLYFLKQDKKFMILSQKLEFAAGAGIIIAISLLVYHLVGVDTEYGYVFQHSSADLALK
YRFSALWAGQEGSFLVWTGFIFIMIAATRFTRAGKVLGETELFALMKSVSLFVASAFLLLLVLKNPFSMYYLTWAGVPEV
TNWNLFAEPFVASYGQGMNPLLRNFWMAIHPPLLFLGYAAFTLPFAAAISGLILRDSRWQEFATGWMRVSWFFLTMGIGS
GAFWAYEVLGWGAWYWTWDPVETSSLIPWLTATAYLHAKLRFRNDEYGFMLPMLALVSFILVIFSTFVTRSGLWVSVHSW
QDFTAEGMVIALFLIIIAGSSTILLVRKYFSED

Sequences:

>Translated_353_residues
MNTGMGLIWIAGASGLLAFFTSLLYFLKQDKKFMILSQKLEFAAGAGIIIAISLLVYHLVGVDTEYGYVFQHSSADLALK
YRFSALWAGQEGSFLVWTGFIFIMIAATRFTRAGKVLGETELFALMKSVSLFVASAFLLLLVLKNPFSMYYLTWAGVPEV
TNWNLFAEPFVASYGQGMNPLLRNFWMAIHPPLLFLGYAAFTLPFAAAISGLILRDSRWQEFATGWMRVSWFFLTMGIGS
GAFWAYEVLGWGAWYWTWDPVETSSLIPWLTATAYLHAKLRFRNDEYGFMLPMLALVSFILVIFSTFVTRSGLWVSVHSW
QDFTAEGMVIALFLIIIAGSSTILLVRKYFSED
>Mature_353_residues
MNTGMGLIWIAGASGLLAFFTSLLYFLKQDKKFMILSQKLEFAAGAGIIIAISLLVYHLVGVDTEYGYVFQHSSADLALK
YRFSALWAGQEGSFLVWTGFIFIMIAATRFTRAGKVLGETELFALMKSVSLFVASAFLLLLVLKNPFSMYYLTWAGVPEV
TNWNLFAEPFVASYGQGMNPLLRNFWMAIHPPLLFLGYAAFTLPFAAAISGLILRDSRWQEFATGWMRVSWFFLTMGIGS
GAFWAYEVLGWGAWYWTWDPVETSSLIPWLTATAYLHAKLRFRNDEYGFMLPMLALVSFILVIFSTFVTRSGLWVSVHSW
QDFTAEGMVIALFLIIIAGSSTILLVRKYFSED

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=353, Percent_Identity=32.8611898016997, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1790511, Length=161, Percent_Identity=39.1304347826087, Blast_Score=104, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 39798; Mature: 39798

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTGMGLIWIAGASGLLAFFTSLLYFLKQDKKFMILSQKLEFAAGAGIIIAISLLVYHLV
CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCHHHHHHHHHHHHHH
GVDTEYGYVFQHSSADLALKYRFSALWAGQEGSFLVWTGFIFIMIAATRFTRAGKVLGET
CCCCCCCEEEEECCCCEEEEEEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHCHH
ELFALMKSVSLFVASAFLLLLVLKNPFSMYYLTWAGVPEVTNWNLFAEPFVASYGQGMNP
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEECCHHHHHCCCCCCH
LLRNFWMAIHPPLLFLGYAAFTLPFAAAISGLILRDSRWQEFATGWMRVSWFFLTMGIGS
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEEECCC
GAFWAYEVLGWGAWYWTWDPVETSSLIPWLTATAYLHAKLRFRNDEYGFMLPMLALVSFI
CHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHH
LVIFSTFVTRSGLWVSVHSWQDFTAEGMVIALFLIIIAGSSTILLVRKYFSED
HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHCCC
>Mature Secondary Structure
MNTGMGLIWIAGASGLLAFFTSLLYFLKQDKKFMILSQKLEFAAGAGIIIAISLLVYHLV
CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCHHHHHHHHHHHHHH
GVDTEYGYVFQHSSADLALKYRFSALWAGQEGSFLVWTGFIFIMIAATRFTRAGKVLGET
CCCCCCCEEEEECCCCEEEEEEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHCHH
ELFALMKSVSLFVASAFLLLLVLKNPFSMYYLTWAGVPEVTNWNLFAEPFVASYGQGMNP
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEECCHHHHHCCCCCCH
LLRNFWMAIHPPLLFLGYAAFTLPFAAAISGLILRDSRWQEFATGWMRVSWFFLTMGIGS
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEEECCC
GAFWAYEVLGWGAWYWTWDPVETSSLIPWLTATAYLHAKLRFRNDEYGFMLPMLALVSFI
CHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHH
LVIFSTFVTRSGLWVSVHSWQDFTAEGMVIALFLIIIAGSSTILLVRKYFSED
HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]