Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

Click here to switch to the map view.

The map label for this gene is 21226226

Identifier: 21226226

GI number: 21226226

Start: 153778

End: 154716

Strand: Direct

Name: 21226226

Synonym: MM_0124

Alternate gene names: NA

Gene position: 153778-154716 (Clockwise)

Preceding gene: 21226225

Following gene: 21226227

Centisome position: 3.75

GC content: 46.01

Gene sequence:

>939_bases
ATGATAGAACTCTTTCTCAGCGTACTGGATTTTGCGCTTCCTGTGCTTGTAATGATTTTTGTCGGGCTTGTAGGCACCAG
TGTACTTGTAGAGCTTGGCCTGATGCAGAAATTTTCAAAACTTGCAAGCCCTGTTTTTGCCTATACGAACCTTCCTGAGA
CCTGTGCTTCTTCTTTTGTCGTGGCAATAGGGTCTGCAGATGCCGCAAACAGCATGCTTCTTCAGGCAAAAAAAGAAAAC
TGCATCAACGACAGGGAAGTCCTTCTATGTTCGATGATGAATGCGACACCTGCCTATTTCAGGGAACTTTTCACCTATCA
GATCCCTATAGTGCTTCCCGCACTCGGGCTTGTGGTCGGAGGATTTTACTCTCTTGTATTTGTGTTCACTGCCGTGGTAA
AAGTTCTGCTTATTGCGGTTGCGAGCAGGATATTTCTTAAGGGCAATTCCTGTAAAGCCCCTGAAACCCGGAGCAGAGAA
AAAGTGTCCCTGAAGACTGCTTTTGAGCGTGCATTCAGGAAAGAGTTCAGGCTCTTTCTGAAGATAGCAGGAATTTACCT
TATAGCAACCACGGTTATTTTCATCCTTCAGGAAAAGGGAGCTTTCGAAATTTTCAGTGTGCTTCCTCTTGCAGAGCTGT
TTAAAATCCCGCCGGAGACAATTGTCCCTCTTACAAGTTACGTAGCGAGCCCCATTCTGGGAATTTCCCTTCTCGGACCC
ATGATCCATTCGGGAGAGATGACAGAGGTACAGGCAATGATCGTACTTATGCTGGGCAGCATGTTCATGCTCCCGATTTT
TGCTATCCGCAGCCAGCTCCCGAGGAAGGTAGCTATTTTCGGGACGCGCCTTGGAGTTCAGATTGTTGCATATTCGACAT
CAATAAGTATACTTGTAAGGTTTGCAATTCTGCTAATACTGCTCAGTATGGTTTCCTGA

Upstream 100 bases:

>100_bases
AAACTCCATGTGTAAAAACATAAAGCGAAAGGTTTCCGGGCAGGAGCTCCGAACTTTTTCGGGATAGATTGATTTACCTG
CCCGGTCCAAATGTCTTTCA

Downstream 100 bases:

>100_bases
AAATAACAAATGGGTTTTAAAAATAATTGTCAAGTTGTATCAAATAAATATTTTCTCAAAAGAGCCTCAGGATATAAAAA
TGTTAAAATAATTAAGTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MIELFLSVLDFALPVLVMIFVGLVGTSVLVELGLMQKFSKLASPVFAYTNLPETCASSFVVAIGSADAANSMLLQAKKEN
CINDREVLLCSMMNATPAYFRELFTYQIPIVLPALGLVVGGFYSLVFVFTAVVKVLLIAVASRIFLKGNSCKAPETRSRE
KVSLKTAFERAFRKEFRLFLKIAGIYLIATTVIFILQEKGAFEIFSVLPLAELFKIPPETIVPLTSYVASPILGISLLGP
MIHSGEMTEVQAMIVLMLGSMFMLPIFAIRSQLPRKVAIFGTRLGVQIVAYSTSISILVRFAILLILLSMVS

Sequences:

>Translated_312_residues
MIELFLSVLDFALPVLVMIFVGLVGTSVLVELGLMQKFSKLASPVFAYTNLPETCASSFVVAIGSADAANSMLLQAKKEN
CINDREVLLCSMMNATPAYFRELFTYQIPIVLPALGLVVGGFYSLVFVFTAVVKVLLIAVASRIFLKGNSCKAPETRSRE
KVSLKTAFERAFRKEFRLFLKIAGIYLIATTVIFILQEKGAFEIFSVLPLAELFKIPPETIVPLTSYVASPILGISLLGP
MIHSGEMTEVQAMIVLMLGSMFMLPIFAIRSQLPRKVAIFGTRLGVQIVAYSTSISILVRFAILLILLSMVS
>Mature_312_residues
MIELFLSVLDFALPVLVMIFVGLVGTSVLVELGLMQKFSKLASPVFAYTNLPETCASSFVVAIGSADAANSMLLQAKKEN
CINDREVLLCSMMNATPAYFRELFTYQIPIVLPALGLVVGGFYSLVFVFTAVVKVLLIAVASRIFLKGNSCKAPETRSRE
KVSLKTAFERAFRKEFRLFLKIAGIYLIATTVIFILQEKGAFEIFSVLPLAELFKIPPETIVPLTSYVASPILGISLLGP
MIHSGEMTEVQAMIVLMLGSMFMLPIFAIRSQLPRKVAIFGTRLGVQIVAYSTSISILVRFAILLILLSMVS

Specific function: Unknown

COG id: COG3366

COG function: function code S; Uncharacterized protein conserved in archaea

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0871, MJ1556 and MJ1589 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011642 [H]

Pfam domain/function: PF07670 Gate [H]

EC number: NA

Molecular weight: Translated: 34183; Mature: 34183

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIELFLSVLDFALPVLVMIFVGLVGTSVLVELGLMQKFSKLASPVFAYTNLPETCASSFV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHE
VAIGSADAANSMLLQAKKENCINDREVLLCSMMNATPAYFRELFTYQIPIVLPALGLVVG
EEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
GFYSLVFVFTAVVKVLLIAVASRIFLKGNSCKAPETRSREKVSLKTAFERAFRKEFRLFL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KIAGIYLIATTVIFILQEKGAFEIFSVLPLAELFKIPPETIVPLTSYVASPILGISLLGP
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
MIHSGEMTEVQAMIVLMLGSMFMLPIFAIRSQLPRKVAIFGTRLGVQIVAYSTSISILVR
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCEEEEEEHHHHHHHHH
FAILLILLSMVS
HHHHHHHHHHHC
>Mature Secondary Structure
MIELFLSVLDFALPVLVMIFVGLVGTSVLVELGLMQKFSKLASPVFAYTNLPETCASSFV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHE
VAIGSADAANSMLLQAKKENCINDREVLLCSMMNATPAYFRELFTYQIPIVLPALGLVVG
EEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
GFYSLVFVFTAVVKVLLIAVASRIFLKGNSCKAPETRSREKVSLKTAFERAFRKEFRLFL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KIAGIYLIATTVIFILQEKGAFEIFSVLPLAELFKIPPETIVPLTSYVASPILGISLLGP
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
MIHSGEMTEVQAMIVLMLGSMFMLPIFAIRSQLPRKVAIFGTRLGVQIVAYSTSISILVR
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCEEEEEEHHHHHHHHH
FAILLILLSMVS
HHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]