Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
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Accession | NC_003901 |
Length | 4,096,345 |
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The map label for this gene is 21226226
Identifier: 21226226
GI number: 21226226
Start: 153778
End: 154716
Strand: Direct
Name: 21226226
Synonym: MM_0124
Alternate gene names: NA
Gene position: 153778-154716 (Clockwise)
Preceding gene: 21226225
Following gene: 21226227
Centisome position: 3.75
GC content: 46.01
Gene sequence:
>939_bases ATGATAGAACTCTTTCTCAGCGTACTGGATTTTGCGCTTCCTGTGCTTGTAATGATTTTTGTCGGGCTTGTAGGCACCAG TGTACTTGTAGAGCTTGGCCTGATGCAGAAATTTTCAAAACTTGCAAGCCCTGTTTTTGCCTATACGAACCTTCCTGAGA CCTGTGCTTCTTCTTTTGTCGTGGCAATAGGGTCTGCAGATGCCGCAAACAGCATGCTTCTTCAGGCAAAAAAAGAAAAC TGCATCAACGACAGGGAAGTCCTTCTATGTTCGATGATGAATGCGACACCTGCCTATTTCAGGGAACTTTTCACCTATCA GATCCCTATAGTGCTTCCCGCACTCGGGCTTGTGGTCGGAGGATTTTACTCTCTTGTATTTGTGTTCACTGCCGTGGTAA AAGTTCTGCTTATTGCGGTTGCGAGCAGGATATTTCTTAAGGGCAATTCCTGTAAAGCCCCTGAAACCCGGAGCAGAGAA AAAGTGTCCCTGAAGACTGCTTTTGAGCGTGCATTCAGGAAAGAGTTCAGGCTCTTTCTGAAGATAGCAGGAATTTACCT TATAGCAACCACGGTTATTTTCATCCTTCAGGAAAAGGGAGCTTTCGAAATTTTCAGTGTGCTTCCTCTTGCAGAGCTGT TTAAAATCCCGCCGGAGACAATTGTCCCTCTTACAAGTTACGTAGCGAGCCCCATTCTGGGAATTTCCCTTCTCGGACCC ATGATCCATTCGGGAGAGATGACAGAGGTACAGGCAATGATCGTACTTATGCTGGGCAGCATGTTCATGCTCCCGATTTT TGCTATCCGCAGCCAGCTCCCGAGGAAGGTAGCTATTTTCGGGACGCGCCTTGGAGTTCAGATTGTTGCATATTCGACAT CAATAAGTATACTTGTAAGGTTTGCAATTCTGCTAATACTGCTCAGTATGGTTTCCTGA
Upstream 100 bases:
>100_bases AAACTCCATGTGTAAAAACATAAAGCGAAAGGTTTCCGGGCAGGAGCTCCGAACTTTTTCGGGATAGATTGATTTACCTG CCCGGTCCAAATGTCTTTCA
Downstream 100 bases:
>100_bases AAATAACAAATGGGTTTTAAAAATAATTGTCAAGTTGTATCAAATAAATATTTTCTCAAAAGAGCCTCAGGATATAAAAA TGTTAAAATAATTAAGTGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 312; Mature: 312
Protein sequence:
>312_residues MIELFLSVLDFALPVLVMIFVGLVGTSVLVELGLMQKFSKLASPVFAYTNLPETCASSFVVAIGSADAANSMLLQAKKEN CINDREVLLCSMMNATPAYFRELFTYQIPIVLPALGLVVGGFYSLVFVFTAVVKVLLIAVASRIFLKGNSCKAPETRSRE KVSLKTAFERAFRKEFRLFLKIAGIYLIATTVIFILQEKGAFEIFSVLPLAELFKIPPETIVPLTSYVASPILGISLLGP MIHSGEMTEVQAMIVLMLGSMFMLPIFAIRSQLPRKVAIFGTRLGVQIVAYSTSISILVRFAILLILLSMVS
Sequences:
>Translated_312_residues MIELFLSVLDFALPVLVMIFVGLVGTSVLVELGLMQKFSKLASPVFAYTNLPETCASSFVVAIGSADAANSMLLQAKKEN CINDREVLLCSMMNATPAYFRELFTYQIPIVLPALGLVVGGFYSLVFVFTAVVKVLLIAVASRIFLKGNSCKAPETRSRE KVSLKTAFERAFRKEFRLFLKIAGIYLIATTVIFILQEKGAFEIFSVLPLAELFKIPPETIVPLTSYVASPILGISLLGP MIHSGEMTEVQAMIVLMLGSMFMLPIFAIRSQLPRKVAIFGTRLGVQIVAYSTSISILVRFAILLILLSMVS >Mature_312_residues MIELFLSVLDFALPVLVMIFVGLVGTSVLVELGLMQKFSKLASPVFAYTNLPETCASSFVVAIGSADAANSMLLQAKKEN CINDREVLLCSMMNATPAYFRELFTYQIPIVLPALGLVVGGFYSLVFVFTAVVKVLLIAVASRIFLKGNSCKAPETRSRE KVSLKTAFERAFRKEFRLFLKIAGIYLIATTVIFILQEKGAFEIFSVLPLAELFKIPPETIVPLTSYVASPILGISLLGP MIHSGEMTEVQAMIVLMLGSMFMLPIFAIRSQLPRKVAIFGTRLGVQIVAYSTSISILVRFAILLILLSMVS
Specific function: Unknown
COG id: COG3366
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.jannaschii MJ0871, MJ1556 and MJ1589 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011642 [H]
Pfam domain/function: PF07670 Gate [H]
EC number: NA
Molecular weight: Translated: 34183; Mature: 34183
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIELFLSVLDFALPVLVMIFVGLVGTSVLVELGLMQKFSKLASPVFAYTNLPETCASSFV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHE VAIGSADAANSMLLQAKKENCINDREVLLCSMMNATPAYFRELFTYQIPIVLPALGLVVG EEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH GFYSLVFVFTAVVKVLLIAVASRIFLKGNSCKAPETRSREKVSLKTAFERAFRKEFRLFL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH KIAGIYLIATTVIFILQEKGAFEIFSVLPLAELFKIPPETIVPLTSYVASPILGISLLGP HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH MIHSGEMTEVQAMIVLMLGSMFMLPIFAIRSQLPRKVAIFGTRLGVQIVAYSTSISILVR HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCEEEEEEHHHHHHHHH FAILLILLSMVS HHHHHHHHHHHC >Mature Secondary Structure MIELFLSVLDFALPVLVMIFVGLVGTSVLVELGLMQKFSKLASPVFAYTNLPETCASSFV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHE VAIGSADAANSMLLQAKKENCINDREVLLCSMMNATPAYFRELFTYQIPIVLPALGLVVG EEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH GFYSLVFVFTAVVKVLLIAVASRIFLKGNSCKAPETRSREKVSLKTAFERAFRKEFRLFL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH KIAGIYLIATTVIFILQEKGAFEIFSVLPLAELFKIPPETIVPLTSYVASPILGISLLGP HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH MIHSGEMTEVQAMIVLMLGSMFMLPIFAIRSQLPRKVAIFGTRLGVQIVAYSTSISILVR HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCEEEEEEHHHHHHHHH FAILLILLSMVS HHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]