Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695892
Identifier: 209695892
GI number: 209695892
Start: 2647163
End: 2648110
Strand: Reverse
Name: 209695892
Synonym: VSAL_I2472
Alternate gene names: NA
Gene position: 2648110-2647163 (Counterclockwise)
Preceding gene: 209695893
Following gene: 209695891
Centisome position: 79.64
GC content: 39.66
Gene sequence:
>948_bases ATGGAAGTAAATATGAAATTAAAATCACTGTCGCTATTTTGTAGCGCCTTATGCTTGTATGCCCCTTTTAGTCTGGCTGC ACATGTTGTCGCTTCTGAAACGTACGCTTCAATGGCACTGCCTAATGATGCGTTGTTATATGATGCTCCTTTAACTTCTG CTTGGGCTCATGGAGCTACGATTGTACAAGGGGTTCCTAGAGGGGATGCGGCGCCATCTTATTGGGCTAATGAAATCGTA GATAAAAGTATTACGACGTCTGATTATTGGAGTGGAATGACTCAATGGTTTACGGTATTTGAAGCGCAAGAGAATAAGGC GACAAATGTTCGTATCGCGATCGGTGATACTGACATTTGGTTATTACGTTCGGTTGATGGAAGTATGAATCCATCTACTG CGGAATGGGTAAATACCACTGAGGATAAACAGCCTATTTCTTGGGCGGCTTATTATTCTCATTATATAATTAAATACATA GAAGATGTTCCGTATCGTCGTTCTGATTCTGGTATCAAAGAATACAAGATTCATAGTAAGCATTATCCACTTCATGGGGG AACAAGTAAAGTTTCTATCGATGGTGAAAATGTCGTTGCTGCTTTTGTTCGAATCCAAGCTTGGTTGGTTACAGATAATG AAAACAACAAAAAAGACAATGAAGAGGCAAAAATATTAATAAGCACGGGGGCTGATTATTATCCAACGGTAAATACGTCA GTATCACATGGTGATTTATCAAACGCTAATTATCTACCAGGTGCAGGAGGAAGCCGTTTTCAGTATTTAACAACGACGCC GACTTGGTATTATATGGGGACCGTGGCTCCAGAAAATTTGTCAATTGTTGATAAGAATAGCCCTTATGTGAAAGCAGGAG GAAAAACCTATTTAACAAAAGATGAATGGTATGAGAACCCACCCCCTGTGAGTTTTTATGATCATTAA
Upstream 100 bases:
>100_bases GAACGAACGTCAAAGCTTGAGATGTAGCCCTTATGGAGAGTCGTTATTTATTTTGTTTTTTACTACATTTTAATCATCAT GGATGTAATGAGTTTCGTTA
Downstream 100 bases:
>100_bases AATAAAATGAGTCTTGATTCTTTTGTAAGAGAGCGTTCTTTTTAAAGAAGAGCTGATAAGAATAAGAGCCTAGCCTAATT GCTAGGCTTTTTTGTTTATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 315; Mature: 315
Protein sequence:
>315_residues MEVNMKLKSLSLFCSALCLYAPFSLAAHVVASETYASMALPNDALLYDAPLTSAWAHGATIVQGVPRGDAAPSYWANEIV DKSITTSDYWSGMTQWFTVFEAQENKATNVRIAIGDTDIWLLRSVDGSMNPSTAEWVNTTEDKQPISWAAYYSHYIIKYI EDVPYRRSDSGIKEYKIHSKHYPLHGGTSKVSIDGENVVAAFVRIQAWLVTDNENNKKDNEEAKILISTGADYYPTVNTS VSHGDLSNANYLPGAGGSRFQYLTTTPTWYYMGTVAPENLSIVDKNSPYVKAGGKTYLTKDEWYENPPPVSFYDH
Sequences:
>Translated_315_residues MEVNMKLKSLSLFCSALCLYAPFSLAAHVVASETYASMALPNDALLYDAPLTSAWAHGATIVQGVPRGDAAPSYWANEIV DKSITTSDYWSGMTQWFTVFEAQENKATNVRIAIGDTDIWLLRSVDGSMNPSTAEWVNTTEDKQPISWAAYYSHYIIKYI EDVPYRRSDSGIKEYKIHSKHYPLHGGTSKVSIDGENVVAAFVRIQAWLVTDNENNKKDNEEAKILISTGADYYPTVNTS VSHGDLSNANYLPGAGGSRFQYLTTTPTWYYMGTVAPENLSIVDKNSPYVKAGGKTYLTKDEWYENPPPVSFYDH >Mature_315_residues MEVNMKLKSLSLFCSALCLYAPFSLAAHVVASETYASMALPNDALLYDAPLTSAWAHGATIVQGVPRGDAAPSYWANEIV DKSITTSDYWSGMTQWFTVFEAQENKATNVRIAIGDTDIWLLRSVDGSMNPSTAEWVNTTEDKQPISWAAYYSHYIIKYI EDVPYRRSDSGIKEYKIHSKHYPLHGGTSKVSIDGENVVAAFVRIQAWLVTDNENNKKDNEEAKILISTGADYYPTVNTS VSHGDLSNANYLPGAGGSRFQYLTTTPTWYYMGTVAPENLSIVDKNSPYVKAGGKTYLTKDEWYENPPPVSFYDH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35068; Mature: 35068
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEVNMKLKSLSLFCSALCLYAPFSLAAHVVASETYASMALPNDALLYDAPLTSAWAHGAT CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHCCCC IVQGVPRGDAAPSYWANEIVDKSITTSDYWSGMTQWFTVFEAQENKATNVRIAIGDTDIW EEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHEEEECCCCCCCEEEEEECCCCEE LLRSVDGSMNPSTAEWVNTTEDKQPISWAAYYSHYIIKYIEDVPYRRSDSGIKEYKIHSK EEEECCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC HYPLHGGTSKVSIDGENVVAAFVRIQAWLVTDNENNKKDNEEAKILISTGADYYPTVNTS CCCCCCCCEEEEECCCHHHEEEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCC VSHGDLSNANYLPGAGGSRFQYLTTTPTWYYMGTVAPENLSIVDKNSPYVKAGGKTYLTK CCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEECCCCEEEECCEEEEEC DEWYENPPPVSFYDH HHCCCCCCCCCCCCC >Mature Secondary Structure MEVNMKLKSLSLFCSALCLYAPFSLAAHVVASETYASMALPNDALLYDAPLTSAWAHGAT CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHCCCC IVQGVPRGDAAPSYWANEIVDKSITTSDYWSGMTQWFTVFEAQENKATNVRIAIGDTDIW EEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHEEEECCCCCCCEEEEEECCCCEE LLRSVDGSMNPSTAEWVNTTEDKQPISWAAYYSHYIIKYIEDVPYRRSDSGIKEYKIHSK EEEECCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC HYPLHGGTSKVSIDGENVVAAFVRIQAWLVTDNENNKKDNEEAKILISTGADYYPTVNTS CCCCCCCCEEEEECCCHHHEEEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCC VSHGDLSNANYLPGAGGSRFQYLTTTPTWYYMGTVAPENLSIVDKNSPYVKAGGKTYLTK CCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEECCCCEEEECCEEEEEC DEWYENPPPVSFYDH HHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA