Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is skp [H]
Identifier: 209695842
GI number: 209695842
Start: 2587403
End: 2587918
Strand: Reverse
Name: skp [H]
Synonym: VSAL_I2418
Alternate gene names: 209695842
Gene position: 2587918-2587403 (Counterclockwise)
Preceding gene: 209695843
Following gene: 209695841
Centisome position: 77.83
GC content: 37.79
Gene sequence:
>516_bases ATGATTTTGAATAAGTTGGTAAAAGCAGCCGCTTTAGGCACCGTTTTGTTAAGTGGTTCTTTTTTCGCTAATGCAGCAGA AGCAGCAACGAAAATTGGTTATGTAAACATGGCTCAAATTGTTCAGCAAATGCCACAAGGTGAAGCTATTTCAGAAAAGC TTCGTGCAGAATTTAAAGATCGTATCGATGAGCTTCGTGGCTTAGAGTCAAAAATCAAAGATAAAGTAGAAACGATTAAA CGTGATGGTGAGCTACTTGGTAATTCAGGTAAAACAAAACTTGAGCGTGAAATTGCGTCTTTGCAATCAGATTATAAACT GAAGGCTCAAGCATTAGATGAAGATAATCGTCGTCGTCAAGGCGAAGAGCGTCAGAAACTAATCATGCAAGTTCAACAAA CAGTTGAAAAAGTAGCAAACAAAGAAGGCTACGATATGGTTGTTGATGCAGCAACTCTACTTTGGGCACAACCTGAAGAC AACCTATCAGAAAAAGTAATCAAAGCAATTAAATAA
Upstream 100 bases:
>100_bases TTTTACCATCGGGCGAACTTTCTAAGCATTGAATGCTCTAATAGAAAAGTGTTAATGTAAATGTTATCTATAGTAGATAC TACAATAATTAAATAAGGGT
Downstream 100 bases:
>100_bases GGTTGAATATGACTCGTATTACGCTTGCTAAATTGGCAGAAAAATTAGGTGCAACCGTTCATGGTAACGGTGATGTTATT GTACATTCGATTGCTTCGAT
Product: outer membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 171; Mature: 171
Protein sequence:
>171_residues MILNKLVKAAALGTVLLSGSFFANAAEAATKIGYVNMAQIVQQMPQGEAISEKLRAEFKDRIDELRGLESKIKDKVETIK RDGELLGNSGKTKLEREIASLQSDYKLKAQALDEDNRRRQGEERQKLIMQVQQTVEKVANKEGYDMVVDAATLLWAQPED NLSEKVIKAIK
Sequences:
>Translated_171_residues MILNKLVKAAALGTVLLSGSFFANAAEAATKIGYVNMAQIVQQMPQGEAISEKLRAEFKDRIDELRGLESKIKDKVETIK RDGELLGNSGKTKLEREIASLQSDYKLKAQALDEDNRRRQGEERQKLIMQVQQTVEKVANKEGYDMVVDAATLLWAQPED NLSEKVIKAIK >Mature_171_residues MILNKLVKAAALGTVLLSGSFFANAAEAATKIGYVNMAQIVQQMPQGEAISEKLRAEFKDRIDELRGLESKIKDKVETIK RDGELLGNSGKTKLEREIASLQSDYKLKAQALDEDNRRRQGEERQKLIMQVQQTVEKVANKEGYDMVVDAATLLWAQPED NLSEKVIKAIK
Specific function: Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm [H]
COG id: COG2825
COG function: function code M; Outer membrane protein
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the skp family [H]
Homologues:
Organism=Escherichia coli, GI1786375, Length=148, Percent_Identity=34.4594594594595, Blast_Score=89, Evalue=2e-19,
Paralogues:
None
Copy number: 580 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005632 [H]
Pfam domain/function: PF03938 OmpH [H]
EC number: NA
Molecular weight: Translated: 19105; Mature: 19105
Theoretical pI: Translated: 8.84; Mature: 8.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILNKLVKAAALGTVLLSGSFFANAAEAATKIGYVNMAQIVQQMPQGEAISEKLRAEFKD CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHH RIDELRGLESKIKDKVETIKRDGELLGNSGKTKLEREIASLQSDYKLKAQALDEDNRRRQ HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC GEERQKLIMQVQQTVEKVANKEGYDMVVDAATLLWAQPEDNLSEKVIKAIK CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCC >Mature Secondary Structure MILNKLVKAAALGTVLLSGSFFANAAEAATKIGYVNMAQIVQQMPQGEAISEKLRAEFKD CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHH RIDELRGLESKIKDKVETIKRDGELLGNSGKTKLEREIASLQSDYKLKAQALDEDNRRRQ HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC GEERQKLIMQVQQTVEKVANKEGYDMVVDAATLLWAQPEDNLSEKVIKAIK CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]