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The map label for this gene is yafD [C]

Identifier: 209695831

GI number: 209695831

Start: 2575504

End: 2576358

Strand: Reverse

Name: yafD [C]

Synonym: VSAL_I2407

Alternate gene names: 209695831

Gene position: 2576358-2575504 (Counterclockwise)

Preceding gene: 209695832

Following gene: 209695830

Centisome position: 77.48

GC content: 37.31

Gene sequence:

>855_bases
ATGAAAAAGAAAACAATATTTATATCAACCGTTGCACTGCTTATTGGTGCGATGATTATGGCTAAATCGTTTATTTTTAC
GATCCCTTTAAAACCAGAGTTAATAGAACTTACGCCTGATTCTATGGATTATAAGACGGGTTGTGCTGAGTTCGATGAAT
CAAAACCTATCGACCGTGATGGTACTATCAACGTACTTGTTTGGAATATTTATAAACAACAAAAACAAGACTGGGAACCT
GCGTTAAGAAAGTTAACTCAAAAAGCAGATTTGGTTTTATTGCAAGAAGCGAGTTTAACGCCTGAATTAAAAGCGTTTAT
TATTGATAAAAGTTATTCTGCTGAATTGGTCAGAGCGTTTGATGTGTTTGATACCAGTGCGGGAGTGTTAAGTCTTGCAA
AAGTACAAGCGGAGCGCGCCTGTGCCCATACCGCGATAGAACCTTGGTTACGTTTACCTAAATCAGCGTTATTATCTGAA
TACGCGTTATCTAATGACGAATCGTTAATGGTGGTTAATGTTCATGCCATCAATTTCACATTAGGAATCGAAGATTATCA
ACGCCAAATGAGTGATTTAGAAAAGGAAGTTAAAAATCATGTTGGGCCACTGATTTTGGCGGGTGATTTTAATTCTTGGA
GTAGTGCTAGATTAGAGGCATTAGATCAAGAAGTGGCTCGCCTTAGATTAAAAGAAGTTCGGTTTACGCCTGATGAGCGA
ATGATATTTATGACAGGGTTACCTTTGGATCATGTTTTTTATCGAGGTTTAAATGTAAAAGAAGCGCACTCAATAAAGAG
TAACGCTTCTGATCATAATCCATTAGAAGTTAGTTTTAGCCTGAAAAGGCCGTAA

Upstream 100 bases:

>100_bases
TCCGAACGGGCGAAGAAGACGAAGACGCAATTTAATTAATACTGTTCTGTTTGAATGGTATAACGTAAGGAAGGAGTGAT
GATTCACTCCTTTTTTGTTT

Downstream 100 bases:

>100_bases
TTAATCCCCATAATGTAAAGCAAGCAACCCATGGAAGGGCGGAGATTATAAGTGCTCTTGCTCTGTCTAAATCCGTCCAT
GCGCCAAGAGCTGCATAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MKKKTIFISTVALLIGAMIMAKSFIFTIPLKPELIELTPDSMDYKTGCAEFDESKPIDRDGTINVLVWNIYKQQKQDWEP
ALRKLTQKADLVLLQEASLTPELKAFIIDKSYSAELVRAFDVFDTSAGVLSLAKVQAERACAHTAIEPWLRLPKSALLSE
YALSNDESLMVVNVHAINFTLGIEDYQRQMSDLEKEVKNHVGPLILAGDFNSWSSARLEALDQEVARLRLKEVRFTPDER
MIFMTGLPLDHVFYRGLNVKEAHSIKSNASDHNPLEVSFSLKRP

Sequences:

>Translated_284_residues
MKKKTIFISTVALLIGAMIMAKSFIFTIPLKPELIELTPDSMDYKTGCAEFDESKPIDRDGTINVLVWNIYKQQKQDWEP
ALRKLTQKADLVLLQEASLTPELKAFIIDKSYSAELVRAFDVFDTSAGVLSLAKVQAERACAHTAIEPWLRLPKSALLSE
YALSNDESLMVVNVHAINFTLGIEDYQRQMSDLEKEVKNHVGPLILAGDFNSWSSARLEALDQEVARLRLKEVRFTPDER
MIFMTGLPLDHVFYRGLNVKEAHSIKSNASDHNPLEVSFSLKRP
>Mature_284_residues
MKKKTIFISTVALLIGAMIMAKSFIFTIPLKPELIELTPDSMDYKTGCAEFDESKPIDRDGTINVLVWNIYKQQKQDWEP
ALRKLTQKADLVLLQEASLTPELKAFIIDKSYSAELVRAFDVFDTSAGVLSLAKVQAERACAHTAIEPWLRLPKSALLSE
YALSNDESLMVVNVHAINFTLGIEDYQRQMSDLEKEVKNHVGPLILAGDFNSWSSARLEALDQEVARLRLKEVRFTPDER
MIFMTGLPLDHVFYRGLNVKEAHSIKSNASDHNPLEVSFSLKRP

Specific function: Unknown

COG id: COG3021

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0294 family [H]

Homologues:

Organism=Escherichia coli, GI1786403, Length=231, Percent_Identity=45.021645021645, Blast_Score=203, Evalue=9e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005135
- InterPro:   IPR022958 [H]

Pfam domain/function: PF03372 Exo_endo_phos [H]

EC number: NA

Molecular weight: Translated: 32098; Mature: 32098

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKTIFISTVALLIGAMIMAKSFIFTIPLKPELIELTPDSMDYKTGCAEFDESKPIDRD
CCCCEEHHHHHHHHHHHHHHHHHHEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
GTINVLVWNIYKQQKQDWEPALRKLTQKADLVLLQEASLTPELKAFIIDKSYSAELVRAF
CEEEEEEEEEHHHHHCCHHHHHHHHHHHCCEEEEECCCCCCCEEEEEECCCCHHHHHHHH
DVFDTSAGVLSLAKVQAERACAHTAIEPWLRLPKSALLSEYALSNDESLMVVNVHAINFT
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEEEEEEEEE
LGIEDYQRQMSDLEKEVKNHVGPLILAGDFNSWSSARLEALDQEVARLRLKEVRFTPDER
ECHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
MIFMTGLPLDHVFYRGLNVKEAHSIKSNASDHNPLEVSFSLKRP
EEEEECCCHHHHHHCCCCCHHHHHHHCCCCCCCCEEEEEEECCC
>Mature Secondary Structure
MKKKTIFISTVALLIGAMIMAKSFIFTIPLKPELIELTPDSMDYKTGCAEFDESKPIDRD
CCCCEEHHHHHHHHHHHHHHHHHHEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
GTINVLVWNIYKQQKQDWEPALRKLTQKADLVLLQEASLTPELKAFIIDKSYSAELVRAF
CEEEEEEEEEHHHHHCCHHHHHHHHHHHCCEEEEECCCCCCCEEEEEECCCCHHHHHHHH
DVFDTSAGVLSLAKVQAERACAHTAIEPWLRLPKSALLSEYALSNDESLMVVNVHAINFT
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEEEEEEEEE
LGIEDYQRQMSDLEKEVKNHVGPLILAGDFNSWSSARLEALDQEVARLRLKEVRFTPDER
ECHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
MIFMTGLPLDHVFYRGLNVKEAHSIKSNASDHNPLEVSFSLKRP
EEEEECCCHHHHHHCCCCCHHHHHHHCCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]