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The map label for this gene is ykfC [H]

Identifier: 209695513

GI number: 209695513

Start: 2215436

End: 2216650

Strand: Direct

Name: ykfC [H]

Synonym: VSAL_I2066

Alternate gene names: 209695513

Gene position: 2215436-2216650 (Clockwise)

Preceding gene: 209695512

Following gene: 209695514

Centisome position: 66.63

GC content: 41.15

Gene sequence:

>1215_bases
ATGCTGTTACTGCAAGCGCTTTACGTGGCATACAAACAAGTGAGAAAGAATGGAGGTGCAGCTGGTATTGACGGGCAGCG
TATCGATGATTTCACACAAAATTTGGAAGTAGAGCTCAGAAAATTATTACTTGAACTACAAGAAAAGCGCTATCAAGCGC
GCCCCGTAAAACGAGTTGAGATCGCCAAAGACGATGGCGGTATCAGGTTATTGGGGATCCCTACAGTTCGAGACCGAATT
GTTCAACAATGTTTAACGAATATAATGACTCCCATATTTGACCCAAACTTTCATCCATCCAGTTATGGATATCGGGTTGG
GCGAAGCTGTCATCAAGCCATCAGCAAAGCTACGCTCTTTATACGTAAATATAATAAGCAGCATGTTGTTGACATGGATC
TGTCTAAATGCTTTGACATGCTTGACCACGATCTGATCATCAAGTTCGTGCGAAAACGCATCGTGGACGGCAGTATCTTA
GGCTTGATCCGTCAATTTCTAAAAAGTGGAGTCATGATTGGTGAAAATTGGCAGAATAGTGTAATAGGCAGTCCACTACT
TGCTAATATCTACTTAGATGAATTCGATCAAGAAATGATGAGGCGTAAGCATCGAATAGTGCGATACGCGGATGACATTT
TGATATTCTGCACCTCGAAAAAGGGAGCAGAGAATGCATTAAAAGTAGCTAGCCATATTTTAGAAGTAACGCTAAAACTT
AAAGTGAATGAGCGGAAAACCCATATAGCACATAGCGATACAGGTATTAAATTCTTGGGAGTGGAAATTTTCACAAATTA
CACGGCAATTCAAGAAAAGAAGCTTAAAACCTTAAAAGCGAAAGTAAGACAACTCACCAAGCGTAATGGAGGAGTGAATT
TAGCGAGAGTGCTAAAGCAACTGAATCCAGTGCTCAGAGGGTTTGTAAACTACTTCAAAATAGCCAATATTACGAGCACA
CTGAAAAGCCTTGCGGCTTGGATAAGGCGCAGATTGCGAGCGGTACAAATGAGTTTGTGGAAGAAGCCGTGCAGATTGCA
TCGTCGTCTTAAGCAACTAAAGTACAAACCGCCATTTAAGTCCATAAAAATGAACTCATGGCGAAACAGTGCGAGTCCGT
TAGCAAGCTATGCGATGCCTAATCAGTGTTTCAAAAGTCTAGGCTTGTATTCAATAGATGAAGTTAAAACAGGTGTACTC
GCTTCTTTTTATTAA

Upstream 100 bases:

>100_bases
CTTAACGCGACAACGAAATAAACCTAACCAATATAAACAAAGTCAGCAGCAGGTGATGTGAGATAATAACTTGAGAGTAC
ACTATAGCCTTTACGGGCGC

Downstream 100 bases:

>100_bases
GAAATAGTAAATTGCAGGAGCCGTATACGAGGTCCGTACGTACGGTTCTGTGAGAGGGATGAGGCAAAAGCCTCACCCTA
CTCGATGATCTTATTCTTTT

Product: group II intron reverse transcriptase/maturase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MLLLQALYVAYKQVRKNGGAAGIDGQRIDDFTQNLEVELRKLLLELQEKRYQARPVKRVEIAKDDGGIRLLGIPTVRDRI
VQQCLTNIMTPIFDPNFHPSSYGYRVGRSCHQAISKATLFIRKYNKQHVVDMDLSKCFDMLDHDLIIKFVRKRIVDGSIL
GLIRQFLKSGVMIGENWQNSVIGSPLLANIYLDEFDQEMMRRKHRIVRYADDILIFCTSKKGAENALKVASHILEVTLKL
KVNERKTHIAHSDTGIKFLGVEIFTNYTAIQEKKLKTLKAKVRQLTKRNGGVNLARVLKQLNPVLRGFVNYFKIANITST
LKSLAAWIRRRLRAVQMSLWKKPCRLHRRLKQLKYKPPFKSIKMNSWRNSASPLASYAMPNQCFKSLGLYSIDEVKTGVL
ASFY

Sequences:

>Translated_404_residues
MLLLQALYVAYKQVRKNGGAAGIDGQRIDDFTQNLEVELRKLLLELQEKRYQARPVKRVEIAKDDGGIRLLGIPTVRDRI
VQQCLTNIMTPIFDPNFHPSSYGYRVGRSCHQAISKATLFIRKYNKQHVVDMDLSKCFDMLDHDLIIKFVRKRIVDGSIL
GLIRQFLKSGVMIGENWQNSVIGSPLLANIYLDEFDQEMMRRKHRIVRYADDILIFCTSKKGAENALKVASHILEVTLKL
KVNERKTHIAHSDTGIKFLGVEIFTNYTAIQEKKLKTLKAKVRQLTKRNGGVNLARVLKQLNPVLRGFVNYFKIANITST
LKSLAAWIRRRLRAVQMSLWKKPCRLHRRLKQLKYKPPFKSIKMNSWRNSASPLASYAMPNQCFKSLGLYSIDEVKTGVL
ASFY
>Mature_404_residues
MLLLQALYVAYKQVRKNGGAAGIDGQRIDDFTQNLEVELRKLLLELQEKRYQARPVKRVEIAKDDGGIRLLGIPTVRDRI
VQQCLTNIMTPIFDPNFHPSSYGYRVGRSCHQAISKATLFIRKYNKQHVVDMDLSKCFDMLDHDLIIKFVRKRIVDGSIL
GLIRQFLKSGVMIGENWQNSVIGSPLLANIYLDEFDQEMMRRKHRIVRYADDILIFCTSKKGAENALKVASHILEVTLKL
KVNERKTHIAHSDTGIKFLGVEIFTNYTAIQEKKLKTLKAKVRQLTKRNGGVNLARVLKQLNPVLRGFVNYFKIANITST
LKSLAAWIRRRLRAVQMSLWKKPCRLHRRLKQLKYKPPFKSIKMNSWRNSASPLASYAMPNQCFKSLGLYSIDEVKTGVL
ASFY

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=325, Percent_Identity=25.2307692307692, Blast_Score=109, Evalue=9e-25,
Organism=Saccharomyces cerevisiae, GI6226520, Length=352, Percent_Identity=26.4204545454545, Blast_Score=100, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 46482; Mature: 46482

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLLQALYVAYKQVRKNGGAAGIDGQRIDDFTQNLEVELRKLLLELQEKRYQARPVKRVE
CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
IAKDDGGIRLLGIPTVRDRIVQQCLTNIMTPIFDPNFHPSSYGYRVGRSCHQAISKATLF
EEECCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
IRKYNKQHVVDMDLSKCFDMLDHDLIIKFVRKRIVDGSILGLIRQFLKSGVMIGENWQNS
HHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEECCCCCCC
VIGSPLLANIYLDEFDQEMMRRKHRIVRYADDILIFCTSKKGAENALKVASHILEVTLKL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHEE
KVNERKTHIAHSDTGIKFLGVEIFTNYTAIQEKKLKTLKAKVRQLTKRNGGVNLARVLKQ
EECCHHHHEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LNPVLRGFVNYFKIANITSTLKSLAAWIRRRLRAVQMSLWKKPCRLHRRLKQLKYKPPFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
SIKMNSWRNSASPLASYAMPNQCFKSLGLYSIDEVKTGVLASFY
HCCCCCCCCCCCHHHHHCCHHHHHHHCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MLLLQALYVAYKQVRKNGGAAGIDGQRIDDFTQNLEVELRKLLLELQEKRYQARPVKRVE
CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
IAKDDGGIRLLGIPTVRDRIVQQCLTNIMTPIFDPNFHPSSYGYRVGRSCHQAISKATLF
EEECCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
IRKYNKQHVVDMDLSKCFDMLDHDLIIKFVRKRIVDGSILGLIRQFLKSGVMIGENWQNS
HHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEECCCCCCC
VIGSPLLANIYLDEFDQEMMRRKHRIVRYADDILIFCTSKKGAENALKVASHILEVTLKL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHEE
KVNERKTHIAHSDTGIKFLGVEIFTNYTAIQEKKLKTLKAKVRQLTKRNGGVNLARVLKQ
EECCHHHHEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LNPVLRGFVNYFKIANITSTLKSLAAWIRRRLRAVQMSLWKKPCRLHRRLKQLKYKPPFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
SIKMNSWRNSASPLASYAMPNQCFKSLGLYSIDEVKTGVLASFY
HCCCCCCCCCCCHHHHHCCHHHHHHHCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]