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The map label for this gene is phnR [H]

Identifier: 209695506

GI number: 209695506

Start: 2206485

End: 2207171

Strand: Direct

Name: phnR [H]

Synonym: VSAL_I2059

Alternate gene names: 209695506

Gene position: 2206485-2207171 (Clockwise)

Preceding gene: 209695505

Following gene: 209695509

Centisome position: 66.36

GC content: 37.7

Gene sequence:

>687_bases
ATGCAATACCTTGCTATAAAAGACGCGATTGAAGAGCAAATAGAAAGTGGAATGCTAGAAATTGGGCATAAATTACCATC
AGAAAGAACACTAGCAGAAGCGTTTTCAACGACTCGAATTACGCTTCGTGAAGCACTTTATCACTTAGAGTTATCGGGTA
AAATATACCGAGAAGAACGTCGTGGATGGTTTGTTTCTTCGAAAGGGATCGTGTTAAATCCGATGGTCGATTTAGATCTG
GCTGTATTATGTTCGAATCAAAAACGACGTTATATAAAAACCACCCTCAATGCACATAAAGTATTAGCACCTAAAGCTAT
TGCAAATGCGCTGCAATTGACGCCTTTTTCTTATGTTCTTGCGTTGTCATCTGTTATCTCTATTGATAGCAGAAAAGTGG
CTATTCAATATCAATATATCCCAGTAGAGCGTTTTCCTAAGTTGCAACAACCTGAAAATGAACCCTCTATAATGACTTAT
TTGAAAGATCACTATTTGTGTCAGGCTGATTTGATAACAATGAAAATAGGCGTTCAACCTGCGGAACTGATTGAGTCAAC
GGCATTGAATATTAGTAGTGGAAGCATGCTTTTTTCTGTGAAACAAACGGTTCATGATTCTCAAGGTAAGGCCTTTTTGT
ACCAAGTGACTAATTGGTGTCATGATGCGGTAAATATAGAAGGTTAA

Upstream 100 bases:

>100_bases
GAAAGGACGCTTACTCAGCAACAATGAGTTACAAGGCTATATGAGTAATGATGTCTACGTACCGACGTTGTAATATTGAT
CGTTAAACCTAGGATAATGA

Downstream 100 bases:

>100_bases
TATGCTAATGCCAGTAATTATCTTTTCAGAATTAATGACACTGGTGTAAAACAGAAGCCGGTTCTGAATGAAAAAATACC
ACGAATAAATCGTGGTATTT

Product: transcription regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MQYLAIKDAIEEQIESGMLEIGHKLPSERTLAEAFSTTRITLREALYHLELSGKIYREERRGWFVSSKGIVLNPMVDLDL
AVLCSNQKRRYIKTTLNAHKVLAPKAIANALQLTPFSYVLALSSVISIDSRKVAIQYQYIPVERFPKLQQPENEPSIMTY
LKDHYLCQADLITMKIGVQPAELIESTALNISSGSMLFSVKQTVHDSQGKAFLYQVTNWCHDAVNIEG

Sequences:

>Translated_228_residues
MQYLAIKDAIEEQIESGMLEIGHKLPSERTLAEAFSTTRITLREALYHLELSGKIYREERRGWFVSSKGIVLNPMVDLDL
AVLCSNQKRRYIKTTLNAHKVLAPKAIANALQLTPFSYVLALSSVISIDSRKVAIQYQYIPVERFPKLQQPENEPSIMTY
LKDHYLCQADLITMKIGVQPAELIESTALNISSGSMLFSVKQTVHDSQGKAFLYQVTNWCHDAVNIEG
>Mature_228_residues
MQYLAIKDAIEEQIESGMLEIGHKLPSERTLAEAFSTTRITLREALYHLELSGKIYREERRGWFVSSKGIVLNPMVDLDL
AVLCSNQKRRYIKTTLNAHKVLAPKAIANALQLTPFSYVLALSSVISIDSRKVAIQYQYIPVERFPKLQQPENEPSIMTY
LKDHYLCQADLITMKIGVQPAELIESTALNISSGSMLFSVKQTVHDSQGKAFLYQVTNWCHDAVNIEG

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790304, Length=231, Percent_Identity=25.1082251082251, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR017722
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 25761; Mature: 25761

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYLAIKDAIEEQIESGMLEIGHKLPSERTLAEAFSTTRITLREALYHLELSGKIYREER
CCEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHC
RGWFVSSKGIVLNPMVDLDLAVLCSNQKRRYIKTTLNAHKVLAPKAIANALQLTPFSYVL
CCEEEECCCEEECCCCCCHHEEEECCCCHHHHHHHHCHHHHCCHHHHHHHHHCCHHHHHH
ALSSVISIDSRKVAIQYQYIPVERFPKLQQPENEPSIMTYLKDHYLCQADLITMKIGVQP
HHHHHHCCCCCEEEEEEEEECHHHCCCCCCCCCCCHHHHHHHHHHEEEEEEEEEEECCCH
AELIESTALNISSGSMLFSVKQTVHDSQGKAFLYQVTNWCHDAVNIEG
HHHHHHHHCCCCCCCEEEEEHHHHHCCCCCEEEEHHHHHHHHHCCCCC
>Mature Secondary Structure
MQYLAIKDAIEEQIESGMLEIGHKLPSERTLAEAFSTTRITLREALYHLELSGKIYREER
CCEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHC
RGWFVSSKGIVLNPMVDLDLAVLCSNQKRRYIKTTLNAHKVLAPKAIANALQLTPFSYVL
CCEEEECCCEEECCCCCCHHEEEECCCCHHHHHHHHCHHHHCCHHHHHHHHHCCHHHHHH
ALSSVISIDSRKVAIQYQYIPVERFPKLQQPENEPSIMTYLKDHYLCQADLITMKIGVQP
HHHHHHCCCCCEEEEEEEEECHHHCCCCCCCCCCCHHHHHHHHHHEEEEEEEEEEECCCH
AELIESTALNISSGSMLFSVKQTVHDSQGKAFLYQVTNWCHDAVNIEG
HHHHHHHHCCCCCCCEEEEEHHHHHCCCCCEEEEHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA