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The map label for this gene is motY [H]

Identifier: 209695330

GI number: 209695330

Start: 1998701

End: 1999579

Strand: Direct

Name: motY [H]

Synonym: VSAL_I1863

Alternate gene names: 209695330

Gene position: 1998701-1999579 (Clockwise)

Preceding gene: 209695326

Following gene: 209695340

Centisome position: 60.11

GC content: 38.57

Gene sequence:

>879_bases
ATGAAAAAAACACTCCTTACTTCAGCGCTACTAATGAGTACATTGATTGCAACTCCTGTATTGGCAAATAAAAATTACGT
TGCGAAACCAGAGCAATCTAAATGGGCAATGCTGGAAAACTCACCATTAGAGTGCCGTTTATCTCATAATATTCCAAATT
ATGGCAATGCAGAGTTCTCTGCTTATGCAAATAAAAAGATGAATTTGGATTTTGAACTAAAGATGAATCGCCCAATGGGA
GAAACTCGTTCTGTTAGTTTAGTTTCAATGCCTGCTCGTTGGATGCCAGGCGACAGCGCTGATACCATGACAAACTTAAA
ATTCTTTAAACAGTTTGATGGTTATGTTGGCGGTTCGACGGCGTGGTCAATGCTTGCTGAATTGGATAATGGGCGTTTCC
CTACATTCACTTATGCCGATTGGCAAAGCCCGAAGCAAATTGTTGAGGTGGGGTTGTCTCCTGTTTTATTTCAAGAACAA
TACAATGTATTTAGTATGTGTATTGCGAATTTATTACCTTACAGCTTTGAAGATATTTCGTTTACGATCCTTCATTTTGA
TAAAAACAGTGATGAGTTAAATAAAGCGTCGAAAAAGCGTTTAGCACAAATTGCCGACTTTATTAAATACACAAAGGATA
TCGACTTAGTGCTCGTTGCTACTTATACCGATTCAAGTGGCGCAAAAAATGTGAATCAACAAGTATCAGAAAGGCGTGCT
GTAAAACTTCAGAATTATTTTGAATCAATAGGGCTACCTGCAGATAGGATCCGAGTGCATTCTTATGGTGAACGCCGTCC
AATTGCCGATAACTCAACACCAATCGGTAAGAATAAAAACCGAAGAGTGGTTATCTCATTAGGTCGAACGATTCTCTAA

Upstream 100 bases:

>100_bases
TCTTTATTTCATTCGTTGCTGGCTTATAGCACTTATTATTGGTCCAGTTTTTGCTTTGTAATAACTATCGTCAACGGCAT
GACCCATAGATTTAGGTATT

Downstream 100 bases:

>100_bases
ATATAAATAATGTAAGGCGTCTAATTTAGACGCCTTTTTTATTGCAGTTTAAAGCTCGCAATAAGTTCACATTGAACCGT
GTGGTCAATATGTTGAATAT

Product: sodium-type flagellar protein MotY precursor

Products: NA

Alternate protein names: Polar flagellum motor protein [H]

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MKKTLLTSALLMSTLIATPVLANKNYVAKPEQSKWAMLENSPLECRLSHNIPNYGNAEFSAYANKKMNLDFELKMNRPMG
ETRSVSLVSMPARWMPGDSADTMTNLKFFKQFDGYVGGSTAWSMLAELDNGRFPTFTYADWQSPKQIVEVGLSPVLFQEQ
YNVFSMCIANLLPYSFEDISFTILHFDKNSDELNKASKKRLAQIADFIKYTKDIDLVLVATYTDSSGAKNVNQQVSERRA
VKLQNYFESIGLPADRIRVHSYGERRPIADNSTPIGKNKNRRVVISLGRTIL

Sequences:

>Translated_292_residues
MKKTLLTSALLMSTLIATPVLANKNYVAKPEQSKWAMLENSPLECRLSHNIPNYGNAEFSAYANKKMNLDFELKMNRPMG
ETRSVSLVSMPARWMPGDSADTMTNLKFFKQFDGYVGGSTAWSMLAELDNGRFPTFTYADWQSPKQIVEVGLSPVLFQEQ
YNVFSMCIANLLPYSFEDISFTILHFDKNSDELNKASKKRLAQIADFIKYTKDIDLVLVATYTDSSGAKNVNQQVSERRA
VKLQNYFESIGLPADRIRVHSYGERRPIADNSTPIGKNKNRRVVISLGRTIL
>Mature_292_residues
MKKTLLTSALLMSTLIATPVLANKNYVAKPEQSKWAMLENSPLECRLSHNIPNYGNAEFSAYANKKMNLDFELKMNRPMG
ETRSVSLVSMPARWMPGDSADTMTNLKFFKQFDGYVGGSTAWSMLAELDNGRFPTFTYADWQSPKQIVEVGLSPVLFQEQ
YNVFSMCIANLLPYSFEDISFTILHFDKNSDELNKASKKRLAQIADFIKYTKDIDLVLVATYTDSSGAKNVNQQVSERRA
VKLQNYFESIGLPADRIRVHSYGERRPIADNSTPIGKNKNRRVVISLGRTIL

Specific function: Plays the role of a stator in the sodium flagellar motor, stabilizing the force-generating unit through direct interaction with the cell wall. Involved in adherence and invasion of fish cell line [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=105, Percent_Identity=39.0476190476191, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 33023; Mature: 33023

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLLTSALLMSTLIATPVLANKNYVAKPEQSKWAMLENSPLECRLSHNIPNYGNAEFS
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCEE
AYANKKMNLDFELKMNRPMGETRSVSLVSMPARWMPGDSADTMTNLKFFKQFDGYVGGST
EECCCEECCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHH
AWSMLAELDNGRFPTFTYADWQSPKQIVEVGLSPVLFQEQYNVFSMCIANLLPYSFEDIS
HHHHHHHHCCCCCCEEEECCCCCHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCCCCEE
FTILHFDKNSDELNKASKKRLAQIADFIKYTKDIDLVLVATYTDSSGAKNVNQQVSERRA
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHH
VKLQNYFESIGLPADRIRVHSYGERRPIADNSTPIGKNKNRRVVISLGRTIL
HHHHHHHHHHCCCHHHEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
>Mature Secondary Structure
MKKTLLTSALLMSTLIATPVLANKNYVAKPEQSKWAMLENSPLECRLSHNIPNYGNAEFS
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCEE
AYANKKMNLDFELKMNRPMGETRSVSLVSMPARWMPGDSADTMTNLKFFKQFDGYVGGST
EECCCEECCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHH
AWSMLAELDNGRFPTFTYADWQSPKQIVEVGLSPVLFQEQYNVFSMCIANLLPYSFEDIS
HHHHHHHHCCCCCCEEEECCCCCHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCCCCEE
FTILHFDKNSDELNKASKKRLAQIADFIKYTKDIDLVLVATYTDSSGAKNVNQQVSERRA
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHH
VKLQNYFESIGLPADRIRVHSYGERRPIADNSTPIGKNKNRRVVISLGRTIL
HHHHHHHHHHCCCHHHEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA