| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695292
Identifier: 209695292
GI number: 209695292
Start: 1944970
End: 1947069
Strand: Direct
Name: 209695292
Synonym: VSAL_I1820
Alternate gene names: NA
Gene position: 1944970-1947069 (Clockwise)
Preceding gene: 209695291
Following gene: 209695295
Centisome position: 58.49
GC content: 36.9
Gene sequence:
>2100_bases ATGAAACTAAGAACAATTTTTATTATTGTATTATCAAATTTGCTTTTTGCTTGTGGTGGAGAGAACAGCGGAGCACCATC CCAAGGTAAACGCACTGAAAATTGGAATGTACCTTTAGCGCAGTCAGTGGCAGTTCAAGGTGACGTATTTTCTGGAAAAA CAATAAATGGTAATTACACATACTTTGACCCAAATTCAAAAGCTCGCCCAGAAAATTTAAGCGAATTTAGGTGGGTGATT GATAATGTTACTAAAAGTACATCCCTATCATTTGATCTTCTTGATGAGCATGTAGGAAAGGATGTTGTTTTTTGTATTAC ACCAATAGCCCTTGGAAACGTTAATTTTGTTGGTGATGAAGTTTGTAGTTTATCGGTAACGGTTAATACTCCAAGTTCAA ATGTAGTACCTGAAGCATTAAATGTAGCGATTAATCCAGAGGTAAATCTGATTGCTGGAGACAAAATATCATCATCTTAT GTTTATTATGATCAAGATAATGATGCAGAATTGAACAGTAAGTTGTTATGGTTTATTGATGACATATTAGTGCAAACTGG TGGGGTTGATTTTGATTTGCCAGCGGACGCAGAATATAAAATATTGAAATTTTGTGTAACGCCAATATCGAATGCGTCTC CGACAACAGGAGTTCAAGTTTGTACACAGTCGGATCAAGTAAAGCCTAAAGTGGGTTCTGTACCTGTTGCAAATAATGTA TCAATTACTGGTGCTCTTACATCAGGCACTAATCTTGTGGGTTCATATTTATATACAGATATAGATGGTGATTTAGAAGG CATATCATTATTTAAGTGGCAACTATCGGGTGTTGACATTAGTGGTGTCTCTATAAATAGTTATACTCCATCAGTTACTG ATGAAGGAGAAACACTCAGTTTTTGTGTTACACCTGTAGCGAGTACTGGTGAACCAAAAATAGGGCTTGAAGCTTGTTAT AATGCGGGTATTATCTCGCCTCCTTTGGGGTTCCCTCCCTCAGCAACGGTTTCAATTAATAATAACTCAAATTCTCCAGT CGCTGGTTTTAGATTACCTGCTACATATACTTATATTCCAGGTATAGATGGACTTGCTCAAGGTAGCTCTATTGTTACAT GGAGTGTTGATGGTGTGGATTCTGGTGTTACTTGTTACCCATTTGCAATTCCTTGTAATTATACAATCAAAGATAATGAT GCAGGGAAAGTAATACAATATTGTGTTACACCAGTGAATGTTAATGGTGCGAGTGGTAGCAAAGTATGTGAGGATATCGT TGGAACATCTATTAAATATAGCGGTAACTTTAATCTATTTGAGAATATTAATGTTAGTTTGCAAGGGTACTCTAATAATA TCAAAACCAGTTGGGGAGTCACATCAAGTTTTGGTATTCAAGACCTACAAAGTACAGGGTTAACATATAAAATAGAATAT TTAGATAAGCTAGGGTTTACAAGTTTAGCTTACGAACTTGTTAGTCAAGATATTGAGTTTTGTGTTGAAGATCTTGATAA AAGCTACAATAAGTATTGTCGCCGAGTATCTGATGATTCATCAAGTCAATATCTAACGGTTAGTGATGGTACTTTTGTTG GGGGGGGGGTTGTGAACCGATATAACACACCTAAAGGCATTGCCCCTGCGACAGTATATCAAGATATGACAACAGGTCTT AAATTCATGAGACCATTAACTCCGGAAGAATCTGAATTTGTCGGTGTAATTGCTGATAGTACTATGGGAGATGGGAACGT AATTATAGCTCATTATTCTTTAGCTAACGCAAGGCAATTATGTTCTTTACTACCCGTTGATGGTGGGGGATGGCGTTTAC CAACATTTGATGAATTACGTAACTTTAATACTAACTTATCAACGTATAATAACCTAGTTGTTGGTAGCAGTCCTCCCGCT ACTTTATCTTCACTTACCTATGAGTTAGGTTGGAGGGGGTTACGTGCAATATGGAGTGGTATTGGGTATTCATTACGGGC ATCTGATGGGAGATTGTATAATACTCAACCTTATGCTGAGGGAGAGGTTTCCATTGCAGATCAAGATACTAAATTTTTTG CAGTAACTTGCGTTAAGTAA
Upstream 100 bases:
>100_bases GTGAGACCGATCCTGTTGCCGATAATAACACGCTAAAAGGGCGATCAATGAACCGTCGTGTTGATTTAATTTCTCCTGCT TTTACTTCAGAGGTTAAACC
Downstream 100 bases:
>100_bases TAATAAAAGAGAACTCTGTGTTTATTAAAACCAGAGTTTTCTTTTGAATTTACATATGCAAAATTAATTATGAATCGCAA CAATGATAAACATCATTTAT
Product: lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 699; Mature: 699
Protein sequence:
>699_residues MKLRTIFIIVLSNLLFACGGENSGAPSQGKRTENWNVPLAQSVAVQGDVFSGKTINGNYTYFDPNSKARPENLSEFRWVI DNVTKSTSLSFDLLDEHVGKDVVFCITPIALGNVNFVGDEVCSLSVTVNTPSSNVVPEALNVAINPEVNLIAGDKISSSY VYYDQDNDAELNSKLLWFIDDILVQTGGVDFDLPADAEYKILKFCVTPISNASPTTGVQVCTQSDQVKPKVGSVPVANNV SITGALTSGTNLVGSYLYTDIDGDLEGISLFKWQLSGVDISGVSINSYTPSVTDEGETLSFCVTPVASTGEPKIGLEACY NAGIISPPLGFPPSATVSINNNSNSPVAGFRLPATYTYIPGIDGLAQGSSIVTWSVDGVDSGVTCYPFAIPCNYTIKDND AGKVIQYCVTPVNVNGASGSKVCEDIVGTSIKYSGNFNLFENINVSLQGYSNNIKTSWGVTSSFGIQDLQSTGLTYKIEY LDKLGFTSLAYELVSQDIEFCVEDLDKSYNKYCRRVSDDSSSQYLTVSDGTFVGGGVVNRYNTPKGIAPATVYQDMTTGL KFMRPLTPEESEFVGVIADSTMGDGNVIIAHYSLANARQLCSLLPVDGGGWRLPTFDELRNFNTNLSTYNNLVVGSSPPA TLSSLTYELGWRGLRAIWSGIGYSLRASDGRLYNTQPYAEGEVSIADQDTKFFAVTCVK
Sequences:
>Translated_699_residues MKLRTIFIIVLSNLLFACGGENSGAPSQGKRTENWNVPLAQSVAVQGDVFSGKTINGNYTYFDPNSKARPENLSEFRWVI DNVTKSTSLSFDLLDEHVGKDVVFCITPIALGNVNFVGDEVCSLSVTVNTPSSNVVPEALNVAINPEVNLIAGDKISSSY VYYDQDNDAELNSKLLWFIDDILVQTGGVDFDLPADAEYKILKFCVTPISNASPTTGVQVCTQSDQVKPKVGSVPVANNV SITGALTSGTNLVGSYLYTDIDGDLEGISLFKWQLSGVDISGVSINSYTPSVTDEGETLSFCVTPVASTGEPKIGLEACY NAGIISPPLGFPPSATVSINNNSNSPVAGFRLPATYTYIPGIDGLAQGSSIVTWSVDGVDSGVTCYPFAIPCNYTIKDND AGKVIQYCVTPVNVNGASGSKVCEDIVGTSIKYSGNFNLFENINVSLQGYSNNIKTSWGVTSSFGIQDLQSTGLTYKIEY LDKLGFTSLAYELVSQDIEFCVEDLDKSYNKYCRRVSDDSSSQYLTVSDGTFVGGGVVNRYNTPKGIAPATVYQDMTTGL KFMRPLTPEESEFVGVIADSTMGDGNVIIAHYSLANARQLCSLLPVDGGGWRLPTFDELRNFNTNLSTYNNLVVGSSPPA TLSSLTYELGWRGLRAIWSGIGYSLRASDGRLYNTQPYAEGEVSIADQDTKFFAVTCVK >Mature_699_residues MKLRTIFIIVLSNLLFACGGENSGAPSQGKRTENWNVPLAQSVAVQGDVFSGKTINGNYTYFDPNSKARPENLSEFRWVI DNVTKSTSLSFDLLDEHVGKDVVFCITPIALGNVNFVGDEVCSLSVTVNTPSSNVVPEALNVAINPEVNLIAGDKISSSY VYYDQDNDAELNSKLLWFIDDILVQTGGVDFDLPADAEYKILKFCVTPISNASPTTGVQVCTQSDQVKPKVGSVPVANNV SITGALTSGTNLVGSYLYTDIDGDLEGISLFKWQLSGVDISGVSINSYTPSVTDEGETLSFCVTPVASTGEPKIGLEACY NAGIISPPLGFPPSATVSINNNSNSPVAGFRLPATYTYIPGIDGLAQGSSIVTWSVDGVDSGVTCYPFAIPCNYTIKDND AGKVIQYCVTPVNVNGASGSKVCEDIVGTSIKYSGNFNLFENINVSLQGYSNNIKTSWGVTSSFGIQDLQSTGLTYKIEY LDKLGFTSLAYELVSQDIEFCVEDLDKSYNKYCRRVSDDSSSQYLTVSDGTFVGGGVVNRYNTPKGIAPATVYQDMTTGL KFMRPLTPEESEFVGVIADSTMGDGNVIIAHYSLANARQLCSLLPVDGGGWRLPTFDELRNFNTNLSTYNNLVVGSSPPA TLSSLTYELGWRGLRAIWSGIGYSLRASDGRLYNTQPYAEGEVSIADQDTKFFAVTCVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 75109; Mature: 75109
Theoretical pI: Translated: 4.21; Mature: 4.21
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLRTIFIIVLSNLLFACGGENSGAPSQGKRTENWNVPLAQSVAVQGDVFSGKTINGNYT CCCCEEHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCHHEEEEECCCCCCCEECCCEE YFDPNSKARPENLSEFRWVIDNVTKSTSLSFDLLDEHVGKDVVFCITPIALGNVNFVGDE EECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEEECEEECCCEEECCC VCSLSVTVNTPSSNVVPEALNVAINPEVNLIAGDKISSSYVYYDQDNDAELNSKLLWFID EEEEEEEEECCCCCCCCHHHEEEECCCEEEEECCCCCCCEEEEECCCCCCCCCEEEEEEH DILVQTGGVDFDLPADAEYKILKFCVTPISNASPTTGVQVCTQSDQVKPKVGSVPVANNV HHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCE SITGALTSGTNLVGSYLYTDIDGDLEGISLFKWQLSGVDISGVSINSYTPSVTDEGETLS EEEEEECCCCHHHEEEEEEECCCCCCCEEEEEEEECCEEEECEEECCCCCCCCCCCCEEE FCVTPVASTGEPKIGLEACYNAGIISPPLGFPPSATVSINNNSNSPVAGFRLPATYTYIP EEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCEEEEECC GIDGLAQGSSIVTWSVDGVDSGVTCYPFAIPCNYTIKDNDAGKVIQYCVTPVNVNGASGS CCCCCCCCCEEEEEEECCCCCCCEEEEEEECCEEEECCCCCCCEEEEEECEEEECCCCCH KVCEDIVGTSIKYSGNFNLFENINVSLQGYSNNIKTSWGVTSSFGIQDLQSTGLTYKIEY HHHHHHHCCEEEECCCCEEEEECEEEEEECCCCCEECCCCCCCCCCHHHHHCCCEEEEEE LDKLGFTSLAYELVSQDIEFCVEDLDKSYNKYCRRVSDDSSSQYLTVSDGTFVGGGVVNR HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEECCCEEEC YNTPKGIAPATVYQDMTTGLKFMRPLTPEESEFVGVIADSTMGDGNVIIAHYSLANARQL CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEECHHCHHHH CSLLPVDGGGWRLPTFDELRNFNTNLSTYNNLVVGSSPPATLSSLTYELGWRGLRAIWSG HHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHCHHHHHHHHHH IGYSLRASDGRLYNTQPYAEGEVSIADQDTKFFAVTCVK CCCEEECCCCEEECCCCCCCCEEEEECCCCEEEEEEEEC >Mature Secondary Structure MKLRTIFIIVLSNLLFACGGENSGAPSQGKRTENWNVPLAQSVAVQGDVFSGKTINGNYT CCCCEEHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCHHEEEEECCCCCCCEECCCEE YFDPNSKARPENLSEFRWVIDNVTKSTSLSFDLLDEHVGKDVVFCITPIALGNVNFVGDE EECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEEECEEECCCEEECCC VCSLSVTVNTPSSNVVPEALNVAINPEVNLIAGDKISSSYVYYDQDNDAELNSKLLWFID EEEEEEEEECCCCCCCCHHHEEEECCCEEEEECCCCCCCEEEEECCCCCCCCCEEEEEEH DILVQTGGVDFDLPADAEYKILKFCVTPISNASPTTGVQVCTQSDQVKPKVGSVPVANNV HHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCE SITGALTSGTNLVGSYLYTDIDGDLEGISLFKWQLSGVDISGVSINSYTPSVTDEGETLS EEEEEECCCCHHHEEEEEEECCCCCCCEEEEEEEECCEEEECEEECCCCCCCCCCCCEEE FCVTPVASTGEPKIGLEACYNAGIISPPLGFPPSATVSINNNSNSPVAGFRLPATYTYIP EEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCEEEEECC GIDGLAQGSSIVTWSVDGVDSGVTCYPFAIPCNYTIKDNDAGKVIQYCVTPVNVNGASGS CCCCCCCCCEEEEEEECCCCCCCEEEEEEECCEEEECCCCCCCEEEEEECEEEECCCCCH KVCEDIVGTSIKYSGNFNLFENINVSLQGYSNNIKTSWGVTSSFGIQDLQSTGLTYKIEY HHHHHHHCCEEEECCCCEEEEECEEEEEECCCCCEECCCCCCCCCCHHHHHCCCEEEEEE LDKLGFTSLAYELVSQDIEFCVEDLDKSYNKYCRRVSDDSSSQYLTVSDGTFVGGGVVNR HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEECCCEEEC YNTPKGIAPATVYQDMTTGLKFMRPLTPEESEFVGVIADSTMGDGNVIIAHYSLANARQL CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEEECHHCHHHH CSLLPVDGGGWRLPTFDELRNFNTNLSTYNNLVVGSSPPATLSSLTYELGWRGLRAIWSG HHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHCHHHHHHHHHH IGYSLRASDGRLYNTQPYAEGEVSIADQDTKFFAVTCVK CCCEEECCCCEEECCCCCCCCEEEEECCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA