| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695245
Identifier: 209695245
GI number: 209695245
Start: 1878265
End: 1878972
Strand: Direct
Name: 209695245
Synonym: VSAL_I1766
Alternate gene names: NA
Gene position: 1878265-1878972 (Clockwise)
Preceding gene: 209695235
Following gene: 209695247
Centisome position: 56.49
GC content: 36.02
Gene sequence:
>708_bases ATGCAGTTAAATCAATATTTTTCGGAAACAGATAATTCATTTGAATTTACACGCCAACAAGCAAGTGATTTTGCGAAAAA AGTGGCAGGTGATTTCAACCCTATTCATGACGTAATCTCAAAGCGTTTCTGTGTTCCTGGTGATTTACTGTTTGCTGTTT TGCTTTCAAAAACAGGCATCAGTAATAAAATGCATTTTAATTTTGCTGGTATGGTATCGGACAGTACGTCACTTCATATC AATCATGCAGAACAAGGTGAATACTCTTTATCTGATCAAAACAATAAAGAATATTTACACGTTAGCCGCAGTGGTGATAA AAACATCGATCCTGAATTCATTGAAAACGTTGTAAAACAATATGTTCAATTCTCAGGCATGAACTTCCCACATATAATGG TCCCTCTAATGGAAGACAAGCAGTTAATGATCAACTGCCAACGTCCATTAGTGATTTATGAAAGTATGGACATCGAGTTT ACTCGCCTTGATCTTGTTAAACCTAGCGTTGAATTTACGGGTGCAACAATGGATATAGAAGGAAAACGAGGACTAGTAAA GCTTAACTTTAAGTTTACTGAAGATGGTGAAGATGTGGGTCATGGTACTAAACGCATGATTGCTACCGGTTTAAAAACAT ACGATCAAGAAGCTATTAATGATCTCGTTGAACGCTTTACTGCTTTAAAAACGGCATATAACAACTAA
Upstream 100 bases:
>100_bases TATCCTTTTTTTACTATCTTGACTGGATAGACCATTAAAGGATTAGAGATTAGGTATACTAGCGTGGTTATTTCATTAGC TAGGTTTTATCAAATATATT
Downstream 100 bases:
>100_bases AGTTTATAAGTCCCTCAAACATCCTATAAAAAGAGCGCTTTTGTGCTCTTTTTATTTGCCATAAGGCAAAGTAAATCACA AAACGTCCTATTGTTTTACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 235; Mature: 235
Protein sequence:
>235_residues MQLNQYFSETDNSFEFTRQQASDFAKKVAGDFNPIHDVISKRFCVPGDLLFAVLLSKTGISNKMHFNFAGMVSDSTSLHI NHAEQGEYSLSDQNNKEYLHVSRSGDKNIDPEFIENVVKQYVQFSGMNFPHIMVPLMEDKQLMINCQRPLVIYESMDIEF TRLDLVKPSVEFTGATMDIEGKRGLVKLNFKFTEDGEDVGHGTKRMIATGLKTYDQEAINDLVERFTALKTAYNN
Sequences:
>Translated_235_residues MQLNQYFSETDNSFEFTRQQASDFAKKVAGDFNPIHDVISKRFCVPGDLLFAVLLSKTGISNKMHFNFAGMVSDSTSLHI NHAEQGEYSLSDQNNKEYLHVSRSGDKNIDPEFIENVVKQYVQFSGMNFPHIMVPLMEDKQLMINCQRPLVIYESMDIEF TRLDLVKPSVEFTGATMDIEGKRGLVKLNFKFTEDGEDVGHGTKRMIATGLKTYDQEAINDLVERFTALKTAYNN >Mature_235_residues MQLNQYFSETDNSFEFTRQQASDFAKKVAGDFNPIHDVISKRFCVPGDLLFAVLLSKTGISNKMHFNFAGMVSDSTSLHI NHAEQGEYSLSDQNNKEYLHVSRSGDKNIDPEFIENVVKQYVQFSGMNFPHIMVPLMEDKQLMINCQRPLVIYESMDIEF TRLDLVKPSVEFTGATMDIEGKRGLVKLNFKFTEDGEDVGHGTKRMIATGLKTYDQEAINDLVERFTALKTAYNN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26761; Mature: 26761
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLNQYFSETDNSFEFTRQQASDFAKKVAGDFNPIHDVISKRFCVPGDLLFAVLLSKTGI CCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCC SNKMHFNFAGMVSDSTSLHINHAEQGEYSLSDQNNKEYLHVSRSGDKNIDPEFIENVVKQ CCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH YVQFSGMNFPHIMVPLMEDKQLMINCQRPLVIYESMDIEFTRLDLVKPSVEFTGATMDIE HHHHCCCCCCEEEEEECCCCEEEEECCCCEEEEECCCCEEEEEEEECCCCEECCEEEEEC GKRGLVKLNFKFTEDGEDVGHGTKRMIATGLKTYDQEAINDLVERFTALKTAYNN CCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MQLNQYFSETDNSFEFTRQQASDFAKKVAGDFNPIHDVISKRFCVPGDLLFAVLLSKTGI CCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCC SNKMHFNFAGMVSDSTSLHINHAEQGEYSLSDQNNKEYLHVSRSGDKNIDPEFIENVVKQ CCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH YVQFSGMNFPHIMVPLMEDKQLMINCQRPLVIYESMDIEFTRLDLVKPSVEFTGATMDIE HHHHCCCCCCEEEEEECCCCEEEEECCCCEEEEECCCCEEEEEEEECCCCEECCEEEEEC GKRGLVKLNFKFTEDGEDVGHGTKRMIATGLKTYDQEAINDLVERFTALKTAYNN CCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA