Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

Click here to switch to the map view.

The map label for this gene is 209695245

Identifier: 209695245

GI number: 209695245

Start: 1878265

End: 1878972

Strand: Direct

Name: 209695245

Synonym: VSAL_I1766

Alternate gene names: NA

Gene position: 1878265-1878972 (Clockwise)

Preceding gene: 209695235

Following gene: 209695247

Centisome position: 56.49

GC content: 36.02

Gene sequence:

>708_bases
ATGCAGTTAAATCAATATTTTTCGGAAACAGATAATTCATTTGAATTTACACGCCAACAAGCAAGTGATTTTGCGAAAAA
AGTGGCAGGTGATTTCAACCCTATTCATGACGTAATCTCAAAGCGTTTCTGTGTTCCTGGTGATTTACTGTTTGCTGTTT
TGCTTTCAAAAACAGGCATCAGTAATAAAATGCATTTTAATTTTGCTGGTATGGTATCGGACAGTACGTCACTTCATATC
AATCATGCAGAACAAGGTGAATACTCTTTATCTGATCAAAACAATAAAGAATATTTACACGTTAGCCGCAGTGGTGATAA
AAACATCGATCCTGAATTCATTGAAAACGTTGTAAAACAATATGTTCAATTCTCAGGCATGAACTTCCCACATATAATGG
TCCCTCTAATGGAAGACAAGCAGTTAATGATCAACTGCCAACGTCCATTAGTGATTTATGAAAGTATGGACATCGAGTTT
ACTCGCCTTGATCTTGTTAAACCTAGCGTTGAATTTACGGGTGCAACAATGGATATAGAAGGAAAACGAGGACTAGTAAA
GCTTAACTTTAAGTTTACTGAAGATGGTGAAGATGTGGGTCATGGTACTAAACGCATGATTGCTACCGGTTTAAAAACAT
ACGATCAAGAAGCTATTAATGATCTCGTTGAACGCTTTACTGCTTTAAAAACGGCATATAACAACTAA

Upstream 100 bases:

>100_bases
TATCCTTTTTTTACTATCTTGACTGGATAGACCATTAAAGGATTAGAGATTAGGTATACTAGCGTGGTTATTTCATTAGC
TAGGTTTTATCAAATATATT

Downstream 100 bases:

>100_bases
AGTTTATAAGTCCCTCAAACATCCTATAAAAAGAGCGCTTTTGTGCTCTTTTTATTTGCCATAAGGCAAAGTAAATCACA
AAACGTCCTATTGTTTTACG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MQLNQYFSETDNSFEFTRQQASDFAKKVAGDFNPIHDVISKRFCVPGDLLFAVLLSKTGISNKMHFNFAGMVSDSTSLHI
NHAEQGEYSLSDQNNKEYLHVSRSGDKNIDPEFIENVVKQYVQFSGMNFPHIMVPLMEDKQLMINCQRPLVIYESMDIEF
TRLDLVKPSVEFTGATMDIEGKRGLVKLNFKFTEDGEDVGHGTKRMIATGLKTYDQEAINDLVERFTALKTAYNN

Sequences:

>Translated_235_residues
MQLNQYFSETDNSFEFTRQQASDFAKKVAGDFNPIHDVISKRFCVPGDLLFAVLLSKTGISNKMHFNFAGMVSDSTSLHI
NHAEQGEYSLSDQNNKEYLHVSRSGDKNIDPEFIENVVKQYVQFSGMNFPHIMVPLMEDKQLMINCQRPLVIYESMDIEF
TRLDLVKPSVEFTGATMDIEGKRGLVKLNFKFTEDGEDVGHGTKRMIATGLKTYDQEAINDLVERFTALKTAYNN
>Mature_235_residues
MQLNQYFSETDNSFEFTRQQASDFAKKVAGDFNPIHDVISKRFCVPGDLLFAVLLSKTGISNKMHFNFAGMVSDSTSLHI
NHAEQGEYSLSDQNNKEYLHVSRSGDKNIDPEFIENVVKQYVQFSGMNFPHIMVPLMEDKQLMINCQRPLVIYESMDIEF
TRLDLVKPSVEFTGATMDIEGKRGLVKLNFKFTEDGEDVGHGTKRMIATGLKTYDQEAINDLVERFTALKTAYNN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26761; Mature: 26761

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLNQYFSETDNSFEFTRQQASDFAKKVAGDFNPIHDVISKRFCVPGDLLFAVLLSKTGI
CCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCC
SNKMHFNFAGMVSDSTSLHINHAEQGEYSLSDQNNKEYLHVSRSGDKNIDPEFIENVVKQ
CCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH
YVQFSGMNFPHIMVPLMEDKQLMINCQRPLVIYESMDIEFTRLDLVKPSVEFTGATMDIE
HHHHCCCCCCEEEEEECCCCEEEEECCCCEEEEECCCCEEEEEEEECCCCEECCEEEEEC
GKRGLVKLNFKFTEDGEDVGHGTKRMIATGLKTYDQEAINDLVERFTALKTAYNN
CCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQLNQYFSETDNSFEFTRQQASDFAKKVAGDFNPIHDVISKRFCVPGDLLFAVLLSKTGI
CCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCC
SNKMHFNFAGMVSDSTSLHINHAEQGEYSLSDQNNKEYLHVSRSGDKNIDPEFIENVVKQ
CCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH
YVQFSGMNFPHIMVPLMEDKQLMINCQRPLVIYESMDIEFTRLDLVKPSVEFTGATMDIE
HHHHCCCCCCEEEEEECCCCEEEEECCCCEEEEECCCCEEEEEEEECCCCEECCEEEEEC
GKRGLVKLNFKFTEDGEDVGHGTKRMIATGLKTYDQEAINDLVERFTALKTAYNN
CCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA