| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is huvC [H]
Identifier: 209695234
GI number: 209695234
Start: 1868428
End: 1869465
Strand: Direct
Name: huvC [H]
Synonym: VSAL_I1755
Alternate gene names: 209695234
Gene position: 1868428-1869465 (Clockwise)
Preceding gene: 209695233
Following gene: 209695235
Centisome position: 56.19
GC content: 39.5
Gene sequence:
>1038_bases ATGTTTTTAAAATATCTCTCATTTTCAAAATTAATGCTCATTGGTTTTAGCATTTTATTTTTAACCACATTATCCTCTAT CGCCGTTGGGCCAATGAATATTACGTTGGCCGATAGCTTTAGTAGCTTATTACCGGGTACCAGAAATATCCCTGCTCATA TTGATTTAATCATTCATCAAGTTAGGTTACCAAGAACATTATTATGTATGTTGGTCGGCGCTATTTTGGCAATTTCTGGC GTAGTAATGCAGGGCTTGTTCCGTAATCCATTAGCGGAACCTGGCATTATTGGAGTCTCTGCAGGCGCAGCTCTTGGAGC AGCATTAGCTATTGTCTCTTTTTCATCAATCAGTACCAGCTACCCTATTTTTATGAACTTTGCTGCTATCCCAATGTTTG CTTTCTTAGGGGGGGCATTAACAACCGTTATCGTTTATCGATTAGGTACGAGTCAGTTTGGAACCTCGATTACGGTTATG CTATTGGCTGGGGTTGCTATTAGTGCATTATCTGGTGCAGGGATTGGCTATTTGAATTTTATCGCTGATGACCAAATGCT GCGAGATTTGTCATTATGGTCAATGGGATCATTGGCAGGTGCATCTTGGCAAGATCTACTCCTCGCCTTTTTGGGCTTAG TCATATTACTCACTATTTTCATGAAAAATGCAGCGGGATTAAATGCGCTATTACTCGGTGAAGCTGAAGCAAAACATTTA GGTATTAATGTACAGTCTTTAAAAAAGCGAATGATAATTTTAAGCGCTATCGGTATTGGTATTACGGTTAGTTTATCTGG CATGATTGGCTTTATTGGTTTAATCATTCCACATTTAGGTCGTATGATGACAGGTCCTAATCATCGTACTTTATTACCAT TATCAGCTCTATTAGGCGGATTATTACTTACCTGTGCTGATATGTTCGCTCGTGTTGCTGTCAGCCCTGCAGAGTTACCT GTCGGCATTGTAACTGCTATTATTGGTGCTCCTTTCTTTTTATATTTACTGTTTACTCAGCGCGGAAAGTTCTCATGA
Upstream 100 bases:
>100_bases AACCATTAATGGATCTGCACTTGTTGGTGGACTCGGTCTTGCCAGTTTAGATGAAGCCGCTCGCTTAAATTTTCTTCTTT ATCCCCAGCAGAATTAAATT
Downstream 100 bases:
>100_bases ATCTCATCTCTACCGCTATTTCAGCAAAAAACATTACCTGCTATTTAAATAATAAATTAATTCTAGATGATCTTAATCTT GATCTTCATTGTGGAGAGGT
Product: heme transporter protein HuvC, transmembrane permease component
Products: ADP; phosphate; cob(I)alamin [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 345; Mature: 345
Protein sequence:
>345_residues MFLKYLSFSKLMLIGFSILFLTTLSSIAVGPMNITLADSFSSLLPGTRNIPAHIDLIIHQVRLPRTLLCMLVGAILAISG VVMQGLFRNPLAEPGIIGVSAGAALGAALAIVSFSSISTSYPIFMNFAAIPMFAFLGGALTTVIVYRLGTSQFGTSITVM LLAGVAISALSGAGIGYLNFIADDQMLRDLSLWSMGSLAGASWQDLLLAFLGLVILLTIFMKNAAGLNALLLGEAEAKHL GINVQSLKKRMIILSAIGIGITVSLSGMIGFIGLIIPHLGRMMTGPNHRTLLPLSALLGGLLLTCADMFARVAVSPAELP VGIVTAIIGAPFFLYLLFTQRGKFS
Sequences:
>Translated_345_residues MFLKYLSFSKLMLIGFSILFLTTLSSIAVGPMNITLADSFSSLLPGTRNIPAHIDLIIHQVRLPRTLLCMLVGAILAISG VVMQGLFRNPLAEPGIIGVSAGAALGAALAIVSFSSISTSYPIFMNFAAIPMFAFLGGALTTVIVYRLGTSQFGTSITVM LLAGVAISALSGAGIGYLNFIADDQMLRDLSLWSMGSLAGASWQDLLLAFLGLVILLTIFMKNAAGLNALLLGEAEAKHL GINVQSLKKRMIILSAIGIGITVSLSGMIGFIGLIIPHLGRMMTGPNHRTLLPLSALLGGLLLTCADMFARVAVSPAELP VGIVTAIIGAPFFLYLLFTQRGKFS >Mature_345_residues MFLKYLSFSKLMLIGFSILFLTTLSSIAVGPMNITLADSFSSLLPGTRNIPAHIDLIIHQVRLPRTLLCMLVGAILAISG VVMQGLFRNPLAEPGIIGVSAGAALGAALAIVSFSSISTSYPIFMNFAAIPMFAFLGGALTTVIVYRLGTSQFGTSITVM LLAGVAISALSGAGIGYLNFIADDQMLRDLSLWSMGSLAGASWQDLLLAFLGLVILLTIFMKNAAGLNALLLGEAEAKHL GINVQSLKKRMIILSAIGIGITVSLSGMIGFIGLIIPHLGRMMTGPNHRTLLPLSALLGGLLLTCADMFARVAVSPAELP VGIVTAIIGAPFFLYLLFTQRGKFS
Specific function: Part of the binding-protein-dependent transport system for hemin; probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0609
COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788004, Length=295, Percent_Identity=39.3220338983051, Blast_Score=158, Evalue=5e-40, Organism=Escherichia coli, GI1790740, Length=285, Percent_Identity=37.8947368421053, Blast_Score=156, Evalue=2e-39, Organism=Escherichia coli, GI1790741, Length=307, Percent_Identity=33.2247557003257, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1786805, Length=322, Percent_Identity=35.7142857142857, Blast_Score=112, Evalue=4e-26, Organism=Escherichia coli, GI1786347, Length=282, Percent_Identity=31.2056737588652, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI1786804, Length=314, Percent_Identity=26.4331210191083, Blast_Score=96, Evalue=3e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000522 [H]
Pfam domain/function: PF01032 FecCD [H]
EC number: NA
Molecular weight: Translated: 36273; Mature: 36273
Theoretical pI: Translated: 10.17; Mature: 10.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFLKYLSFSKLMLIGFSILFLTTLSSIAVGPMNITLADSFSSLLPGTRNIPAHIDLIIHQ CEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHCCCCCCCCHHHHHHHHH VRLPRTLLCMLVGAILAISGVVMQGLFRNPLAEPGIIGVSAGAALGAALAIVSFSSISTS HHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCC YPIFMNFAAIPMFAFLGGALTTVIVYRLGTSQFGTSITVMLLAGVAISALSGAGIGYLNF CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHCCCCCHHHHH IADDQMLRDLSLWSMGSLAGASWQDLLLAFLGLVILLTIFMKNAAGLNALLLGEAEAKHL HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH GINVQSLKKRMIILSAIGIGITVSLSGMIGFIGLIIPHLGRMMTGPNHRTLLPLSALLGG CCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHH LLLTCADMFARVAVSPAELPVGIVTAIIGAPFFLYLLFTQRGKFS HHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MFLKYLSFSKLMLIGFSILFLTTLSSIAVGPMNITLADSFSSLLPGTRNIPAHIDLIIHQ CEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHCCCCCCCCHHHHHHHHH VRLPRTLLCMLVGAILAISGVVMQGLFRNPLAEPGIIGVSAGAALGAALAIVSFSSISTS HHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCC YPIFMNFAAIPMFAFLGGALTTVIVYRLGTSQFGTSITVMLLAGVAISALSGAGIGYLNF CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHCCCCCHHHHH IADDQMLRDLSLWSMGSLAGASWQDLLLAFLGLVILLTIFMKNAAGLNALLLGEAEAKHL HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH GINVQSLKKRMIILSAIGIGITVSLSGMIGFIGLIIPHLGRMMTGPNHRTLLPLSALLGG CCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHH LLLTCADMFARVAVSPAELPVGIVTAIIGAPFFLYLLFTQRGKFS HHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; cob(I)alamin [Periplasm]; H2O [C]
Specific reaction: ATP + cob(I)alamin [Periplasm] + H2O = ADP + phosphate + cob(I)alamin [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9026634; 11586360; 12142430 [H]