Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695133

Identifier: 209695133

GI number: 209695133

Start: 1737876

End: 1738826

Strand: Direct

Name: 209695133

Synonym: VSAL_I1634

Alternate gene names: NA

Gene position: 1737876-1738826 (Clockwise)

Preceding gene: 209695132

Following gene: 209695134

Centisome position: 52.26

GC content: 36.07

Gene sequence:

>951_bases
ATGGCAGCAGGTAGAATATGTCCTTTAAATTATCGAATTAATTTAAAGGACATAAAAGAATCAACATCAACTTCTTGTGA
AACTATCTATATTATTGGTGGTTTATACGGAAACTGGGCAGCTCTCAATACGATTTTGCAACGAAAGAGGCAAGAAGAAG
CAGAAAATAACTCGACGATCACTTTACTATTTAATGGGGATTTCAATTGGCTAAACTCTACGAGAGAAACATTTAAATCG
ATTAACCAAGAAGTGTTTAAGCACTTAGCATTAAAAGGAAATGTTGAATGTGAGATAGCGACACCAACACAAGGGGCTGG
TTGTGGTTGCGCCTACCCAGACTCTATTTTAGATCAAACGGTAACCCATTCGAATAATATAATAAAAAAATTACAAAAAA
TCGCAGCTTATAATCAAGAAATAATTGCAAAATTAGCTGAGTTACCAAGCTTTCTCAATGTATCTGTTGGTGAGTTAAAA
ATCACTGCATTACATGGTGATCCAGATTCTATTGCTGGTTGGGGCTTAGGAATAGATGCAATGCCACCTATCGGACAAAA
TAGTAAATGTATATCATCATGGTTCACTCAAACTGAGGCAGATGTTTTTGCTTGTAGTCATACTTGCCTACCATTTATAC
AAGATTTTGACGATCGTCTAGTCGTTAATAATGGTTCAGCAGGAATGCCAAATTTTAAAAAAAATCTATCCGGTATCATT
ACTCGAATTAGTACCTATAAAACTAACCTCCCTACCCTCTATGGAACTAAATTGAAAGATTGTTATATAGACGCAATAGC
AATTGATTGGAACTCAGAATGGGATGATTGGTTTATTCAACATTGGCCCTCAGGCTCTCCGGCATCGTCATCTTATTATT
CTCGCTTTATTGATGGCCCTGACTTTACAATTGCTCAAGCGATCCGATTAAACACAACGAAGAAGATTTAA

Upstream 100 bases:

>100_bases
TAACTTTTGCGTGACTACTTATAACTGCATTTATTATATTATTTGGACTTATTATTTTTTCTCTAGGCATTAAAAATGAA
AAATTAACGAGGGTCAATTG

Downstream 100 bases:

>100_bases
TAATTAATGAATAAATTCATCCCATTAAGTAAGAAACACGCTATATTATTTGTTACTAATAATATACCCAATGTATCACT
ACCATCATTAATGAACGTTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MAAGRICPLNYRINLKDIKESTSTSCETIYIIGGLYGNWAALNTILQRKRQEEAENNSTITLLFNGDFNWLNSTRETFKS
INQEVFKHLALKGNVECEIATPTQGAGCGCAYPDSILDQTVTHSNNIIKKLQKIAAYNQEIIAKLAELPSFLNVSVGELK
ITALHGDPDSIAGWGLGIDAMPPIGQNSKCISSWFTQTEADVFACSHTCLPFIQDFDDRLVVNNGSAGMPNFKKNLSGII
TRISTYKTNLPTLYGTKLKDCYIDAIAIDWNSEWDDWFIQHWPSGSPASSSYYSRFIDGPDFTIAQAIRLNTTKKI

Sequences:

>Translated_316_residues
MAAGRICPLNYRINLKDIKESTSTSCETIYIIGGLYGNWAALNTILQRKRQEEAENNSTITLLFNGDFNWLNSTRETFKS
INQEVFKHLALKGNVECEIATPTQGAGCGCAYPDSILDQTVTHSNNIIKKLQKIAAYNQEIIAKLAELPSFLNVSVGELK
ITALHGDPDSIAGWGLGIDAMPPIGQNSKCISSWFTQTEADVFACSHTCLPFIQDFDDRLVVNNGSAGMPNFKKNLSGII
TRISTYKTNLPTLYGTKLKDCYIDAIAIDWNSEWDDWFIQHWPSGSPASSSYYSRFIDGPDFTIAQAIRLNTTKKI
>Mature_315_residues
AAGRICPLNYRINLKDIKESTSTSCETIYIIGGLYGNWAALNTILQRKRQEEAENNSTITLLFNGDFNWLNSTRETFKSI
NQEVFKHLALKGNVECEIATPTQGAGCGCAYPDSILDQTVTHSNNIIKKLQKIAAYNQEIIAKLAELPSFLNVSVGELKI
TALHGDPDSIAGWGLGIDAMPPIGQNSKCISSWFTQTEADVFACSHTCLPFIQDFDDRLVVNNGSAGMPNFKKNLSGIIT
RISTYKTNLPTLYGTKLKDCYIDAIAIDWNSEWDDWFIQHWPSGSPASSSYYSRFIDGPDFTIAQAIRLNTTKKI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35069; Mature: 34938

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAGRICPLNYRINLKDIKESTSTSCETIYIIGGLYGNWAALNTILQRKRQEEAENNSTI
CCCCCEEEEEEEEEHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEE
TLLFNGDFNWLNSTRETFKSINQEVFKHLALKGNVECEIATPTQGAGCGCAYPDSILDQT
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHH
VTHSNNIIKKLQKIAAYNQEIIAKLAELPSFLNVSVGELKITALHGDPDSIAGWGLGIDA
HHCCHHHHHHHHHHHHHCHHHHHHHHHCCHHHCCEECEEEEEEEECCCCCCCCCCCCCCC
MPPIGQNSKCISSWFTQTEADVFACSHTCLPFIQDFDDRLVVNNGSAGMPNFKKNLSGII
CCCCCCCCHHHHHHHHHCCCHHEEHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH
TRISTYKTNLPTLYGTKLKDCYIDAIAIDWNSEWDDWFIQHWPSGSPASSSYYSRFIDGP
HHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHCCCCCCCCCHHHHHHHCCCC
DFTIAQAIRLNTTKKI
CHHHHHHEECCCCCCC
>Mature Secondary Structure 
AAGRICPLNYRINLKDIKESTSTSCETIYIIGGLYGNWAALNTILQRKRQEEAENNSTI
CCCCEEEEEEEEEHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEE
TLLFNGDFNWLNSTRETFKSINQEVFKHLALKGNVECEIATPTQGAGCGCAYPDSILDQT
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHH
VTHSNNIIKKLQKIAAYNQEIIAKLAELPSFLNVSVGELKITALHGDPDSIAGWGLGIDA
HHCCHHHHHHHHHHHHHCHHHHHHHHHCCHHHCCEECEEEEEEEECCCCCCCCCCCCCCC
MPPIGQNSKCISSWFTQTEADVFACSHTCLPFIQDFDDRLVVNNGSAGMPNFKKNLSGII
CCCCCCCCHHHHHHHHHCCCHHEEHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH
TRISTYKTNLPTLYGTKLKDCYIDAIAIDWNSEWDDWFIQHWPSGSPASSSYYSRFIDGP
HHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHCCCCCCCCCHHHHHHHCCCC
DFTIAQAIRLNTTKKI
CHHHHHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA