Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695128
Identifier: 209695128
GI number: 209695128
Start: 1732609
End: 1733025
Strand: Direct
Name: 209695128
Synonym: VSAL_I1627
Alternate gene names: NA
Gene position: 1732609-1733025 (Clockwise)
Preceding gene: 209695127
Following gene: 209695129
Centisome position: 52.11
GC content: 30.46
Gene sequence:
>417_bases ATGATTCATTCTGATGCTTTAAATTTAACTCGAAGATTAGCTATTAGTTTATTAACTTTGCGCATAACTATTACCTTAGT TTTTACTGTTTGGGCCATTGATAAAGTCGTAGCTCCAGAACATGCATTGAGTGTGTTCTCAAATTTTTATGGGCTGAGCT TATCAACAGATATATCTATTTTAATGGGGATCAGTCAGCTTATATTTATTGCCATTTTTCTTTTAGGTATATGGAAAAAT ATCACTTATTTAATCGTACTTATCTTCCATATGGGCTCCACATTTTCATCGTATTTGAAATATTTTGACCCTCTTAATAA TTTATTGTTTTTTACCGCATGGCCAATGCTTGCAGCTTGTTTGACACTATATATATTAAGAGAATATGACATATGGACCT TTAAGATAAAAAAATAA
Upstream 100 bases:
>100_bases ACTAAACCTAAATAAAATATAAATTAAACTAAACAGTTTAGTTTATATTTGGAATTTTAAGCAAAAAATTCTGAAAAAAA CCAATAAGGACATTCAATAC
Downstream 100 bases:
>100_bases CATCACCCTATTATTTAAATATATATTACATAAGGTTTTTATGAATTTTATCTTACCAAATGATTTACAAAAATTTAATT TTCCACAAATAGAAAGAAAA
Product: membrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 138; Mature: 138
Protein sequence:
>138_residues MIHSDALNLTRRLAISLLTLRITITLVFTVWAIDKVVAPEHALSVFSNFYGLSLSTDISILMGISQLIFIAIFLLGIWKN ITYLIVLIFHMGSTFSSYLKYFDPLNNLLFFTAWPMLAACLTLYILREYDIWTFKIKK
Sequences:
>Translated_138_residues MIHSDALNLTRRLAISLLTLRITITLVFTVWAIDKVVAPEHALSVFSNFYGLSLSTDISILMGISQLIFIAIFLLGIWKN ITYLIVLIFHMGSTFSSYLKYFDPLNNLLFFTAWPMLAACLTLYILREYDIWTFKIKK >Mature_138_residues MIHSDALNLTRRLAISLLTLRITITLVFTVWAIDKVVAPEHALSVFSNFYGLSLSTDISILMGISQLIFIAIFLLGIWKN ITYLIVLIFHMGSTFSSYLKYFDPLNNLLFFTAWPMLAACLTLYILREYDIWTFKIKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15903; Mature: 15903
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIHSDALNLTRRLAISLLTLRITITLVFTVWAIDKVVAPEHALSVFSNFYGLSLSTDISI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHH LMGISQLIFIAIFLLGIWKNITYLIVLIFHMGSTFSSYLKYFDPLNNLLFFTAWPMLAAC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTLYILREYDIWTFKIKK HHHHHHHHCCEEEEEECC >Mature Secondary Structure MIHSDALNLTRRLAISLLTLRITITLVFTVWAIDKVVAPEHALSVFSNFYGLSLSTDISI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHH LMGISQLIFIAIFLLGIWKNITYLIVLIFHMGSTFSSYLKYFDPLNNLLFFTAWPMLAAC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTLYILREYDIWTFKIKK HHHHHHHHCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA