Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

Click here to switch to the map view.

The map label for this gene is 209695128

Identifier: 209695128

GI number: 209695128

Start: 1732609

End: 1733025

Strand: Direct

Name: 209695128

Synonym: VSAL_I1627

Alternate gene names: NA

Gene position: 1732609-1733025 (Clockwise)

Preceding gene: 209695127

Following gene: 209695129

Centisome position: 52.11

GC content: 30.46

Gene sequence:

>417_bases
ATGATTCATTCTGATGCTTTAAATTTAACTCGAAGATTAGCTATTAGTTTATTAACTTTGCGCATAACTATTACCTTAGT
TTTTACTGTTTGGGCCATTGATAAAGTCGTAGCTCCAGAACATGCATTGAGTGTGTTCTCAAATTTTTATGGGCTGAGCT
TATCAACAGATATATCTATTTTAATGGGGATCAGTCAGCTTATATTTATTGCCATTTTTCTTTTAGGTATATGGAAAAAT
ATCACTTATTTAATCGTACTTATCTTCCATATGGGCTCCACATTTTCATCGTATTTGAAATATTTTGACCCTCTTAATAA
TTTATTGTTTTTTACCGCATGGCCAATGCTTGCAGCTTGTTTGACACTATATATATTAAGAGAATATGACATATGGACCT
TTAAGATAAAAAAATAA

Upstream 100 bases:

>100_bases
ACTAAACCTAAATAAAATATAAATTAAACTAAACAGTTTAGTTTATATTTGGAATTTTAAGCAAAAAATTCTGAAAAAAA
CCAATAAGGACATTCAATAC

Downstream 100 bases:

>100_bases
CATCACCCTATTATTTAAATATATATTACATAAGGTTTTTATGAATTTTATCTTACCAAATGATTTACAAAAATTTAATT
TTCCACAAATAGAAAGAAAA

Product: membrane protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MIHSDALNLTRRLAISLLTLRITITLVFTVWAIDKVVAPEHALSVFSNFYGLSLSTDISILMGISQLIFIAIFLLGIWKN
ITYLIVLIFHMGSTFSSYLKYFDPLNNLLFFTAWPMLAACLTLYILREYDIWTFKIKK

Sequences:

>Translated_138_residues
MIHSDALNLTRRLAISLLTLRITITLVFTVWAIDKVVAPEHALSVFSNFYGLSLSTDISILMGISQLIFIAIFLLGIWKN
ITYLIVLIFHMGSTFSSYLKYFDPLNNLLFFTAWPMLAACLTLYILREYDIWTFKIKK
>Mature_138_residues
MIHSDALNLTRRLAISLLTLRITITLVFTVWAIDKVVAPEHALSVFSNFYGLSLSTDISILMGISQLIFIAIFLLGIWKN
ITYLIVLIFHMGSTFSSYLKYFDPLNNLLFFTAWPMLAACLTLYILREYDIWTFKIKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15903; Mature: 15903

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHSDALNLTRRLAISLLTLRITITLVFTVWAIDKVVAPEHALSVFSNFYGLSLSTDISI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHH
LMGISQLIFIAIFLLGIWKNITYLIVLIFHMGSTFSSYLKYFDPLNNLLFFTAWPMLAAC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTLYILREYDIWTFKIKK
HHHHHHHHCCEEEEEECC
>Mature Secondary Structure
MIHSDALNLTRRLAISLLTLRITITLVFTVWAIDKVVAPEHALSVFSNFYGLSLSTDISI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHH
LMGISQLIFIAIFLLGIWKNITYLIVLIFHMGSTFSSYLKYFDPLNNLLFFTAWPMLAAC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTLYILREYDIWTFKIKK
HHHHHHHHCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA