Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is malI [H]
Identifier: 209695119
GI number: 209695119
Start: 1725340
End: 1726362
Strand: Direct
Name: malI [H]
Synonym: VSAL_I1618
Alternate gene names: 209695119
Gene position: 1725340-1726362 (Clockwise)
Preceding gene: 209695118
Following gene: 209695121
Centisome position: 51.89
GC content: 38.61
Gene sequence:
>1023_bases ATGACTAACAAAAAAGCAAATATAAAGGATGTTGCAAAACGAGCGGGAGTCTCAGTAACAACCGTATCAATGGCACTGAG TGATAAAGGACGGATCTCACCTGAAACCATTCAAAAAGTAAATCAAGCGGTACAAGAACTCGGCTACATTAAAAATCGCA CCGCTTCTAATTTAAGTTCAAAACAATCATTATTGATTGGCTTAATTTTAAGAGACATCAGCGACCCCTATTACGCTGAA ATAGCAGCAGGATTAAGTGAAGTCTTAGAAGATAAGGGATACATGCTTTTTCTTACCCAATCAGGCACAAATCAAGATAA GTTTGATCAATGTATTGAAACCATGGTGGCTCAAAATGTTGGTGGGATTGTATTTTGCCCTATCCGTGATATTGGCGTTC CGAATATTCAAAAAATACAAGATTTAAACTTACCAATAGTCTGTGTTGCTCGAGCCAAAGTAGGGCAGCAGATTGACTTT GTTGGGCCCGATAATATGCAAGCTGCGAAAATTGCTACAGAGTATTTGATTAAACAAGGGCACCGTCAAATAGCTTACGT TGGCGGACAAAGTGATTCATTAAGTAGAGCCGAACGTTTAGGTGGTTATTGCAGCACACTAATGCAATTTGGCTTACCTT TTAAACCTGAATGGGTTGTTGAATGTGATAAAAGTCAAACTGCCGCCGCAGAAGCAGTAAATCAACTAATTAATAAAAAT CCAAAAATAACAGCAATACTATGTCATTATTCATCAACCGCATTTGGTGCTGTTTATGGTGTTAATCGCTCTAATCGCAC AGTGGGTAAAGATAATTACATTGGACAACAAGTCGCTATTATTGGATTTGATGATGTCCCTGAAGCCGAGTTAATTCAAC CTTCATTAACCTTTGTCTCCTCCCCTATTCGTGACATTGGTCGCCAAGCTGGCCACCGATTAATTCACCAAATAAACAAT AAAGACAGTGCACCTCAAAGTCTTATTTTAAATCCAGAATTAATTGCTCGTGACTCAGCTTAG
Upstream 100 bases:
>100_bases ACGATCTTTTTCCATTAGATTGATAATTACGCTAGAATGGCGTCAATAAATGTGTTTAATTAGGTAAAACGTTTTATCTA ATCGTGGTAAAAGAAGTGCT
Downstream 100 bases:
>100_bases TTAAACCATACTCATAAGTAAAAATCACATATAAAAAAGGTATTTGGGTTAGTCATATTTTATTACAGCCCAAAGACTTA CTACTAAGTTCGTAATCTAT
Product: DNA-binding transcriptional repressor MalI
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 340; Mature: 339
Protein sequence:
>340_residues MTNKKANIKDVAKRAGVSVTTVSMALSDKGRISPETIQKVNQAVQELGYIKNRTASNLSSKQSLLIGLILRDISDPYYAE IAAGLSEVLEDKGYMLFLTQSGTNQDKFDQCIETMVAQNVGGIVFCPIRDIGVPNIQKIQDLNLPIVCVARAKVGQQIDF VGPDNMQAAKIATEYLIKQGHRQIAYVGGQSDSLSRAERLGGYCSTLMQFGLPFKPEWVVECDKSQTAAAEAVNQLINKN PKITAILCHYSSTAFGAVYGVNRSNRTVGKDNYIGQQVAIIGFDDVPEAELIQPSLTFVSSPIRDIGRQAGHRLIHQINN KDSAPQSLILNPELIARDSA
Sequences:
>Translated_340_residues MTNKKANIKDVAKRAGVSVTTVSMALSDKGRISPETIQKVNQAVQELGYIKNRTASNLSSKQSLLIGLILRDISDPYYAE IAAGLSEVLEDKGYMLFLTQSGTNQDKFDQCIETMVAQNVGGIVFCPIRDIGVPNIQKIQDLNLPIVCVARAKVGQQIDF VGPDNMQAAKIATEYLIKQGHRQIAYVGGQSDSLSRAERLGGYCSTLMQFGLPFKPEWVVECDKSQTAAAEAVNQLINKN PKITAILCHYSSTAFGAVYGVNRSNRTVGKDNYIGQQVAIIGFDDVPEAELIQPSLTFVSSPIRDIGRQAGHRLIHQINN KDSAPQSLILNPELIARDSA >Mature_339_residues TNKKANIKDVAKRAGVSVTTVSMALSDKGRISPETIQKVNQAVQELGYIKNRTASNLSSKQSLLIGLILRDISDPYYAEI AAGLSEVLEDKGYMLFLTQSGTNQDKFDQCIETMVAQNVGGIVFCPIRDIGVPNIQKIQDLNLPIVCVARAKVGQQIDFV GPDNMQAAKIATEYLIKQGHRQIAYVGGQSDSLSRAERLGGYCSTLMQFGLPFKPEWVVECDKSQTAAAEAVNQLINKNP KITAILCHYSSTAFGAVYGVNRSNRTVGKDNYIGQQVAIIGFDDVPEAELIQPSLTFVSSPIRDIGRQAGHRLIHQINNK DSAPQSLILNPELIARDSA
Specific function: Repressor for the malX and malY genes. Also regulates its own expression. Binds maltose as an inducer [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1787906, Length=338, Percent_Identity=43.1952662721894, Blast_Score=298, Evalue=4e-82, Organism=Escherichia coli, GI1790369, Length=336, Percent_Identity=29.1666666666667, Blast_Score=150, Evalue=1e-37, Organism=Escherichia coli, GI1789068, Length=333, Percent_Identity=31.5315315315315, Blast_Score=143, Evalue=1e-35, Organism=Escherichia coli, GI1787948, Length=337, Percent_Identity=29.080118694362, Blast_Score=140, Evalue=1e-34, Organism=Escherichia coli, GI1790194, Length=341, Percent_Identity=27.8592375366569, Blast_Score=139, Evalue=4e-34, Organism=Escherichia coli, GI1789202, Length=338, Percent_Identity=29.2899408284024, Blast_Score=132, Evalue=4e-32, Organism=Escherichia coli, GI48994940, Length=332, Percent_Identity=28.3132530120482, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1788474, Length=335, Percent_Identity=27.4626865671642, Blast_Score=122, Evalue=3e-29, Organism=Escherichia coli, GI1790715, Length=327, Percent_Identity=25.3822629969419, Blast_Score=118, Evalue=6e-28, Organism=Escherichia coli, GI1787580, Length=334, Percent_Identity=25.4491017964072, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1786540, Length=319, Percent_Identity=27.2727272727273, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1786268, Length=307, Percent_Identity=25.0814332247557, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1790689, Length=334, Percent_Identity=23.0538922155689, Blast_Score=68, Evalue=8e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000843 - InterPro: IPR010982 - InterPro: IPR001761 [H]
Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]
EC number: NA
Molecular weight: Translated: 37041; Mature: 36910
Theoretical pI: Translated: 8.10; Mature: 8.10
Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNKKANIKDVAKRAGVSVTTVSMALSDKGRISPETIQKVNQAVQELGYIKNRTASNLSS CCCCCCCHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCHH KQSLLIGLILRDISDPYYAEIAAGLSEVLEDKGYMLFLTQSGTNQDKFDQCIETMVAQNV HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCC GGIVFCPIRDIGVPNIQKIQDLNLPIVCVARAKVGQQIDFVGPDNMQAAKIATEYLIKQG CCEEEECCCCCCCCCHHHHHHCCCCEEEEEEHHCCCEEECCCCCCCHHHHHHHHHHHHCC HRQIAYVGGQSDSLSRAERLGGYCSTLMQFGLPFKPEWVVECDKSQTAAAEAVNQLINKN CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCC PKITAILCHYSSTAFGAVYGVNRSNRTVGKDNYIGQQVAIIGFDDVPEAELIQPSLTFVS CCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCHHHHHHH SPIRDIGRQAGHRLIHQINNKDSAPQSLILNPELIARDSA HHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHCCCCC >Mature Secondary Structure TNKKANIKDVAKRAGVSVTTVSMALSDKGRISPETIQKVNQAVQELGYIKNRTASNLSS CCCCCCHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCHH KQSLLIGLILRDISDPYYAEIAAGLSEVLEDKGYMLFLTQSGTNQDKFDQCIETMVAQNV HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCC GGIVFCPIRDIGVPNIQKIQDLNLPIVCVARAKVGQQIDFVGPDNMQAAKIATEYLIKQG CCEEEECCCCCCCCCHHHHHHCCCCEEEEEEHHCCCEEECCCCCCCHHHHHHHHHHHHCC HRQIAYVGGQSDSLSRAERLGGYCSTLMQFGLPFKPEWVVECDKSQTAAAEAVNQLINKN CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCC PKITAILCHYSSTAFGAVYGVNRSNRTVGKDNYIGQQVAIIGFDDVPEAELIQPSLTFVS CCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCHHHHHHH SPIRDIGRQAGHRLIHQINNKDSAPQSLILNPELIARDSA HHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2670898; 1856179; 9097039; 9278503 [H]