Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695098
Identifier: 209695098
GI number: 209695098
Start: 1702528
End: 1703538
Strand: Direct
Name: 209695098
Synonym: VSAL_I1595
Alternate gene names: NA
Gene position: 1702528-1703538 (Clockwise)
Preceding gene: 209695090
Following gene: 209695102
Centisome position: 51.2
GC content: 38.77
Gene sequence:
>1011_bases ATGAATGGAATCATGAAAATAGGTATGTCTATGAATAAATTAAGTATAATGACGCCTGTTCTCGTCAGTGTTAGCTTGCT CTTTCTGCTTTCGGGCTGTGCTTCTACTGAACAAGCCACCACAGTAAAAACGAATCCTAACGTAAAACAATCATTGCAAA TACCAGGGCTGAAACATTGCTCGAATACGGAAGATAACACCCTTAATATTGATCCAAATACCCCATTAACGGTTATTGTT CATGGTTGCTTTTCTTCCGCCGGAAAATTTAGAGCGTTATCAGAAGTCTACGATTTGAATGATCAACAAGCGATTTGCTT TGAATACGATGACAGAGATAGCCTCGAAACATCCTCAGGAGAGCTCGTATACGCTCTTAATCAATTATCTAAATACAACC CTAATCAACCGTTACATGTTATTGGACATAGCCAAGGCGGGCTTGTTGCACGAAGAGCATTAACGTTAGACAGAGAAGAC AAACAAATCATCCATTCAGAACAGATTAAATTAACCACAGTATCTTCGCCCTTTAATGGCATTAATGCGTCATCACACTG TGGAATTACTTCATTACGAATATTATCACTCGGTATTGTCGATCTTATCTGCTACGCCGTTACGGGTGAGAAATACCAAC AAATCCCCCCCAATGTTGATTTTATGACAACACCTGGTGAATTATCGCCATCGGTATCACAACACTTAATTATTAAAACC GATGAACGTAATCAGTGTCGTCGAATGAGCGAAAACCAACGCTGCCTAGAAGATGATTATGTGTTTAGTTTGGAAGAGCA ATCAAATACAGCGGTTGACGCCTTCTCTGAGGTAATTCCAATGACAGTGGAAATCGGACATGTGAAAATTGTCGGTAATG AGCAAACCCCACCAACAACACTCATTAATATACTTAGAGATAAAAAGCTTCTGTTAACCAAAGATGGCATTAGTGAATCT GAACAAGCTTCGTTGATAAAAAAAATATATTCAGATACCCGTTATAACTAA
Upstream 100 bases:
>100_bases GAAAAAGAAAACAAGATAAATTCGGAGGTAGGTCACATTACCTATTAAGTAGATCAATTAAATACCATATTCTAGAGTCA GTAGTATAAGATAAAACCTA
Downstream 100 bases:
>100_bases TTTCATCTTACCTATTTTCATACCATTTCACTCTTACGGTAGTAATGGCGATAATAGCCAATTAAATTACTACCAATAAA CAACGTTTCCATAAGAACAG
Product: lipoprotein
Products: NA
Alternate protein names: Hydrolase/Lipase; Lipoprotein
Number of amino acids: Translated: 336; Mature: 336
Protein sequence:
>336_residues MNGIMKIGMSMNKLSIMTPVLVSVSLLFLLSGCASTEQATTVKTNPNVKQSLQIPGLKHCSNTEDNTLNIDPNTPLTVIV HGCFSSAGKFRALSEVYDLNDQQAICFEYDDRDSLETSSGELVYALNQLSKYNPNQPLHVIGHSQGGLVARRALTLDRED KQIIHSEQIKLTTVSSPFNGINASSHCGITSLRILSLGIVDLICYAVTGEKYQQIPPNVDFMTTPGELSPSVSQHLIIKT DERNQCRRMSENQRCLEDDYVFSLEEQSNTAVDAFSEVIPMTVEIGHVKIVGNEQTPPTTLINILRDKKLLLTKDGISES EQASLIKKIYSDTRYN
Sequences:
>Translated_336_residues MNGIMKIGMSMNKLSIMTPVLVSVSLLFLLSGCASTEQATTVKTNPNVKQSLQIPGLKHCSNTEDNTLNIDPNTPLTVIV HGCFSSAGKFRALSEVYDLNDQQAICFEYDDRDSLETSSGELVYALNQLSKYNPNQPLHVIGHSQGGLVARRALTLDRED KQIIHSEQIKLTTVSSPFNGINASSHCGITSLRILSLGIVDLICYAVTGEKYQQIPPNVDFMTTPGELSPSVSQHLIIKT DERNQCRRMSENQRCLEDDYVFSLEEQSNTAVDAFSEVIPMTVEIGHVKIVGNEQTPPTTLINILRDKKLLLTKDGISES EQASLIKKIYSDTRYN >Mature_336_residues MNGIMKIGMSMNKLSIMTPVLVSVSLLFLLSGCASTEQATTVKTNPNVKQSLQIPGLKHCSNTEDNTLNIDPNTPLTVIV HGCFSSAGKFRALSEVYDLNDQQAICFEYDDRDSLETSSGELVYALNQLSKYNPNQPLHVIGHSQGGLVARRALTLDRED KQIIHSEQIKLTTVSSPFNGINASSHCGITSLRILSLGIVDLICYAVTGEKYQQIPPNVDFMTTPGELSPSVSQHLIIKT DERNQCRRMSENQRCLEDDYVFSLEEQSNTAVDAFSEVIPMTVEIGHVKIVGNEQTPPTTLINILRDKKLLLTKDGISES EQASLIKKIYSDTRYN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37139; Mature: 37139
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00120 LIPASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNGIMKIGMSMNKLSIMTPVLVSVSLLFLLSGCASTEQATTVKTNPNVKQSLQIPGLKHC CCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHEECCCCCCCC SNTEDNTLNIDPNTPLTVIVHGCFSSAGKFRALSEVYDLNDQQAICFEYDDRDSLETSSG CCCCCCEEEECCCCCEEEEEEEHHCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCC ELVYALNQLSKYNPNQPLHVIGHSQGGLVARRALTLDREDKQIIHSEQIKLTTVSSPFNG CEEEEEHHHHHCCCCCCEEEEECCCCCEEEHHEECCCCCHHHHHHCCCEEEEEECCCCCC INASSHCGITSLRILSLGIVDLICYAVTGEKYQQIPPNVDFMTTPGELSPSVSQHLIIKT CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEECCCCCCCCCCCEEEEEE DERNQCRRMSENQRCLEDDYVFSLEEQSNTAVDAFSEVIPMTVEIGHVKIVGNEQTPPTT CCHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCEEEEEEEEEEECCCCCCHHH LINILRDKKLLLTKDGISESEQASLIKKIYSDTRYN HHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure MNGIMKIGMSMNKLSIMTPVLVSVSLLFLLSGCASTEQATTVKTNPNVKQSLQIPGLKHC CCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHEECCCCCCCC SNTEDNTLNIDPNTPLTVIVHGCFSSAGKFRALSEVYDLNDQQAICFEYDDRDSLETSSG CCCCCCEEEECCCCCEEEEEEEHHCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCC ELVYALNQLSKYNPNQPLHVIGHSQGGLVARRALTLDREDKQIIHSEQIKLTTVSSPFNG CEEEEEHHHHHCCCCCCEEEEECCCCCEEEHHEECCCCCHHHHHHCCCEEEEEECCCCCC INASSHCGITSLRILSLGIVDLICYAVTGEKYQQIPPNVDFMTTPGELSPSVSQHLIIKT CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEECCCCCCCCCCCEEEEEE DERNQCRRMSENQRCLEDDYVFSLEEQSNTAVDAFSEVIPMTVEIGHVKIVGNEQTPPTT CCHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCEEEEEEEEEEECCCCCCHHH LINILRDKKLLLTKDGISESEQASLIKKIYSDTRYN HHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA