Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694987

Identifier: 209694987

GI number: 209694987

Start: 1588718

End: 1589356

Strand: Direct

Name: 209694987

Synonym: VSAL_I1475

Alternate gene names: NA

Gene position: 1588718-1589356 (Clockwise)

Preceding gene: 209694986

Following gene: 209694988

Centisome position: 47.78

GC content: 36.93

Gene sequence:

>639_bases
TTAGCATATTCTTACGAGAACCCGTCTGGATATGCTATATCTTCGCTTTTGGTCGATAAGTACACTGCGGCTTCAATTTT
TGTATGGAATAAAACAGTGTATAAAATACTCCCATTGCTTGTAACCGTATGTTCATTTTCAACATTTGCAGAAGAAACAA
ATACGCCATATCAAGATGTATATGTTGCGGCAGGTTATTCCTCACATGAAATATCAGATAAAACTGGTGATGCGTTTGAT
GCGTTTGATGGGTATTTTGGCGCTAGAAACATCTATGCGAACTCTTTTTTCGTTGGTGGCGAAGTTGAAGGGAAAATAAT
TAAAAATTCATCGCTTAAAGATTCAACTGGCTTTAAAGAGAAGTATGCATTTTCAGCAAATATTCCTTTAGGGAAGAGAT
TTGAGCTGTCTGATGCTATCGATCTTGATGCCTATGGGTTAATCGGCTATTCAATGTTAAAGACAGAACCATCAATGGAT
GATTCCTCGTACGGCTTCAAATACGGTGCAGGGGTGGATCTTAATATGACGGATTGGTTTATTGGTGTTCGTTACACTAC
TGTCGATTTACATTCTGATGTGGATCAAAAAGACATTTCATTACTCGTTGGCTATAAACTTCATTCATTGTTTAATTAA

Upstream 100 bases:

>100_bases
TTTAAAAGAACTCAATAATAAACCGTGGCTAATTACGGCCTTAATCCGTTGGGGTATCGCCTTATTTGAATACATACCTT
ACGATAAGTGAAGCATTAAT

Downstream 100 bases:

>100_bases
TACAATTATTGATTTGTGCTGAAAATGCAGTAGTGGCACCAAGAAAGCTCGTTATTTTTTTACCGAGCTTTTCTCGTTTT
AATGCAATAAATTAAAATCA

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MAYSYENPSGYAISSLLVDKYTAASIFVWNKTVYKILPLLVTVCSFSTFAEETNTPYQDVYVAAGYSSHEISDKTGDAFD
AFDGYFGARNIYANSFFVGGEVEGKIIKNSSLKDSTGFKEKYAFSANIPLGKRFELSDAIDLDAYGLIGYSMLKTEPSMD
DSSYGFKYGAGVDLNMTDWFIGVRYTTVDLHSDVDQKDISLLVGYKLHSLFN

Sequences:

>Translated_212_residues
LAYSYENPSGYAISSLLVDKYTAASIFVWNKTVYKILPLLVTVCSFSTFAEETNTPYQDVYVAAGYSSHEISDKTGDAFD
AFDGYFGARNIYANSFFVGGEVEGKIIKNSSLKDSTGFKEKYAFSANIPLGKRFELSDAIDLDAYGLIGYSMLKTEPSMD
DSSYGFKYGAGVDLNMTDWFIGVRYTTVDLHSDVDQKDISLLVGYKLHSLFN
>Mature_212_residues
LAYSYENPSGYAISSLLVDKYTAASIFVWNKTVYKILPLLVTVCSFSTFAEETNTPYQDVYVAAGYSSHEISDKTGDAFD
AFDGYFGARNIYANSFFVGGEVEGKIIKNSSLKDSTGFKEKYAFSANIPLGKRFELSDAIDLDAYGLIGYSMLKTEPSMD
DSSYGFKYGAGVDLNMTDWFIGVRYTTVDLHSDVDQKDISLLVGYKLHSLFN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23504; Mature: 23504

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
LAYSYENPSGYAISSLLVDKYTAASIFVWNKTVYKILPLLVTVCSFSTFAEETNTPYQDV
CCCCCCCCCCHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHHCCHHHHHHCCCCHHHE
YVAAGYSSHEISDKTGDAFDAFDGYFGARNIYANSFFVGGEVEGKIIKNSSLKDSTGFKE
EEECCCCCCCCCCCCCCHHHHHCCCCCCCEEEECEEEECCCCCCEEEECCCCCCCCCCCH
KYAFSANIPLGKRFELSDAIDLDAYGLIGYSMLKTEPSMDDSSYGFKYGAGVDLNMTDWF
HEEEECCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCEE
IGVRYTTVDLHSDVDQKDISLLVGYKLHSLFN
EEEEEEEEECCCCCCCCCEEEEEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA