Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694953
Identifier: 209694953
GI number: 209694953
Start: 1546052
End: 1548943
Strand: Direct
Name: 209694953
Synonym: VSAL_I1433
Alternate gene names: NA
Gene position: 1546052-1548943 (Clockwise)
Preceding gene: 209694952
Following gene: 209694954
Centisome position: 46.5
GC content: 40.39
Gene sequence:
>2892_bases GTGAAAAACAGATCGTTTTCGTCAATATTTATTCTCAGTGTGCTATCTCTTTCAATGTTGAGTGCCAACAGTTCGGCCAA TGTCAGTGCTATTCCTGTGATTGGTGGCGTAGTTAACTCAGCAGAAATACTAAAAAATCAGATAAACGCTTCGGTCATTT ATACAACGAAAACGGTGCGTGATGCCGCTATTTTTACCATTGCTGGCATCACATTAGACGCTTACATTTTATCGCTACCA TTGGAGAGTGATGTTAAGAAAAGCATCATTGCAAAGCTTTCAAATCCCTCATACGCGATCCCTTTAGGGCATTTTCTTTA TACCTTTGTGGATAAATACGGAGATATGGATAATGAAGATGCTTTTAAAGCCTATTTGAAAACACAATATGATGAAGAAA CACTCACCGGATTTAGTCATTCTTTATTTACTTTAAATGAGGAAGACAAAGAAAAGGAACCAGAGTTGGCGGATAGCCAT CATCAAGGATTAACTATTGATCGTAAATTCATTGCGAACATGGTGATTGTTTATGATGAATTGGTACAGATTGGTGAGTG GAAGGATCTTGACGTACTGCCTGAGCGTTATACGTACCTGTCTGATACCCCTGAAGATAAAAAGATCATCGATAAAATTC AACCCATCATTATTGCGAGTATGACAAAAGCCGTCACGGGTATGAACGAAGGGGAGATGCGTGCTACGTTAGAGCAAATT ATAGAAGATGGTCAGCCAGAGCATAAAGGCTCTGTAAATAATAAAGCGGAAGCATTAACGATTACTCTGATTGATTTTGT TCGTCTTAATGTATTGAAATCGTACCGCCAGTTTATCTATCAAGAACAACGACAAGAAGTATTGAATGAGTGGTTACAAG CGCGTTTTAAAGATAATCCAGATACGCTCATCGCTTATTTAGACTCTCGTCAGCAGCGTCGACTAGCAGTGCAAGTTACG GTTGATGGATTGCAACAAGGGCTACTTGAAGGTCTTGTTTCTCCGCTGAAAAAGCCATTCATCAAACAGATCTATCAAGA TCACCTTAACCATGAAAGCTACAAACCTCAGAATGAAATCACCACGCAGCCAGAACATGAGCAACAACTGTCATTCTTAA AAAGATTGACCGAGAAAGAGTATAAAGACCCATCGTACTTGCCATTTTTTACTGAGCTGTATAAAAACTACGATAACAGC ATTGTCGATGTGGGCATTTCATCAACACCGACTATCAGTGTTCGCAATTTACCGATAATAAAAACCGGCGCAAAAGTGTC AGGTAAAGGCGGGACTGGGATACCAAATTTTCACTTTGTCGATAGAAAAGAAGATCGTGCCTATTATTTCTTTGGCAACG ATGCGTTGCAACTTGACCGCTTGATGGAAGCGAACAAGGTTCAAACTATGTTTGATCGCTTGGATTATTTGGTGACTTTA AACTGTAATGCGCAATATGATTGGAATGCACATACCACCTATGATGGCTTGGTGAATTTAGGGGCAGGTGAGAGCTTACG AGATTTTGGTGAAAAGCGTTGTCTGCGAGAGTTGACACAACGTGCAGAAATAGAGAAAACAGTGTCGACCATGAGAGCCG ATCTTATTGAAGACATTCGTGTTTATGACGGTATCTTTGCCTTGGATATTTACAGCAAGTTAACTCAAAAATGGAAGATC CAACAAAACCTAGAATCCCTCTCGAAACTTGAACAAAAAGGGATGCCAGATTACACACTAATTTATAATCCATGGCCGGA TCACTTTGCTCATTTCACTGGCCCGTTTAGTGATGAAATATTGATGCCGACCGGGGAGTTAAACCGATTAGATTATTGGT TAACGCAATTTACCAACACATATAAAGACGCTGGCGTATACGATAGAACCTTATGGGGAATGGCAGGAGATCACGGTTTA GCGCCTGTTTACTATTCATTGAATCCGGAAAAACAGGTATTTGAACCTCTTGAAAAAGAACTTGGCTATCCATTAGTGAT AAAGAAAATCTCATCCGACGAAGGTGAAGGGCCTAAAATTACCAACGCGTTGAATTATGAAAGCAATAAAGAAGTCGATG TGGTGGTCGCTTCTACTGCGGGTGGTAATTTTATGATGGATTTCTTTAATTCTGCCCAAGGTTGGAAAGTGCAACCAACG TACGCTGAGCTAACAACGTGGACGCCTGTTAATGCGCTAAAAGGTAAGTCTATCAACGTGATTAATGAGGTTGCTTCACG TTTAGAAGAATCGTTAGATTATCTCGTTGTTAGAGAAAAAAACTGCACGTTAGATGAATGTACAGTTCGAATTATCGGTT TTAAAGACGATGTTAGAGTTGATGAATTAATCACTAAAAAAGGGGACCGATTACTGTATCAGCCTGTTATTGGATCATCC CAGTTACTTGAACTCGATGTTCTGAATCCTTATAAATCGCAGCCAAATAAAGCTGAATTAGCATCATATCAAGAGTTATA TCAACGATGTATGGTGTCTGCAAAGGCTGATAAGCCCACTGCGTGGTGCACTAAAGCGCAATGGCGAGCGCTGACTGCTT TTTCTGCAAGACCCGATTCAGTCAATCAATTGGCTACATTGTATGAAGAAGACAGAGCAGGGACGATAAACTTGTTTCCT AAATTTGGTGTTGGTTTTAATACCAAAGTACCGGGCAGACATGCTGGCGAACACTATTTAGAAAAAGATGCTTTTTTAGG ATTCTGGGGAACCCCTGTAGGCCCTAATGTTACGGCATTAACGAGTGAGGCGAATGGGTCATTGGCGCCAACATTGTATG AATATCTTACTCAAGAAACCGTTATCGAGAATAACAACGGCTGGGGTTATCCTTCTTTACTCGATGATCTGGATATACAA CCGAGCAAATAG
Upstream 100 bases:
>100_bases TGCAGTCTAAATAAGTCGTTGATGGTTCTTATGTACCAAAACCAATGCCAGTAATTATCAGCTCAATGACTTATCCAAAT TGCTATAAAAGGAAGTTAAA
Downstream 100 bases:
>100_bases ACAGAAGGTCGATTCCTCGATTAACTGAAGGCTTTATATTGTTCTTCGGCCTCGAAGGTAAGTTTCGCGGCTTCAATGGT CATTAAGTTAATTGGTGTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 963; Mature: 963
Protein sequence:
>963_residues MKNRSFSSIFILSVLSLSMLSANSSANVSAIPVIGGVVNSAEILKNQINASVIYTTKTVRDAAIFTIAGITLDAYILSLP LESDVKKSIIAKLSNPSYAIPLGHFLYTFVDKYGDMDNEDAFKAYLKTQYDEETLTGFSHSLFTLNEEDKEKEPELADSH HQGLTIDRKFIANMVIVYDELVQIGEWKDLDVLPERYTYLSDTPEDKKIIDKIQPIIIASMTKAVTGMNEGEMRATLEQI IEDGQPEHKGSVNNKAEALTITLIDFVRLNVLKSYRQFIYQEQRQEVLNEWLQARFKDNPDTLIAYLDSRQQRRLAVQVT VDGLQQGLLEGLVSPLKKPFIKQIYQDHLNHESYKPQNEITTQPEHEQQLSFLKRLTEKEYKDPSYLPFFTELYKNYDNS IVDVGISSTPTISVRNLPIIKTGAKVSGKGGTGIPNFHFVDRKEDRAYYFFGNDALQLDRLMEANKVQTMFDRLDYLVTL NCNAQYDWNAHTTYDGLVNLGAGESLRDFGEKRCLRELTQRAEIEKTVSTMRADLIEDIRVYDGIFALDIYSKLTQKWKI QQNLESLSKLEQKGMPDYTLIYNPWPDHFAHFTGPFSDEILMPTGELNRLDYWLTQFTNTYKDAGVYDRTLWGMAGDHGL APVYYSLNPEKQVFEPLEKELGYPLVIKKISSDEGEGPKITNALNYESNKEVDVVVASTAGGNFMMDFFNSAQGWKVQPT YAELTTWTPVNALKGKSINVINEVASRLEESLDYLVVREKNCTLDECTVRIIGFKDDVRVDELITKKGDRLLYQPVIGSS QLLELDVLNPYKSQPNKAELASYQELYQRCMVSAKADKPTAWCTKAQWRALTAFSARPDSVNQLATLYEEDRAGTINLFP KFGVGFNTKVPGRHAGEHYLEKDAFLGFWGTPVGPNVTALTSEANGSLAPTLYEYLTQETVIENNNGWGYPSLLDDLDIQ PSK
Sequences:
>Translated_963_residues MKNRSFSSIFILSVLSLSMLSANSSANVSAIPVIGGVVNSAEILKNQINASVIYTTKTVRDAAIFTIAGITLDAYILSLP LESDVKKSIIAKLSNPSYAIPLGHFLYTFVDKYGDMDNEDAFKAYLKTQYDEETLTGFSHSLFTLNEEDKEKEPELADSH HQGLTIDRKFIANMVIVYDELVQIGEWKDLDVLPERYTYLSDTPEDKKIIDKIQPIIIASMTKAVTGMNEGEMRATLEQI IEDGQPEHKGSVNNKAEALTITLIDFVRLNVLKSYRQFIYQEQRQEVLNEWLQARFKDNPDTLIAYLDSRQQRRLAVQVT VDGLQQGLLEGLVSPLKKPFIKQIYQDHLNHESYKPQNEITTQPEHEQQLSFLKRLTEKEYKDPSYLPFFTELYKNYDNS IVDVGISSTPTISVRNLPIIKTGAKVSGKGGTGIPNFHFVDRKEDRAYYFFGNDALQLDRLMEANKVQTMFDRLDYLVTL NCNAQYDWNAHTTYDGLVNLGAGESLRDFGEKRCLRELTQRAEIEKTVSTMRADLIEDIRVYDGIFALDIYSKLTQKWKI QQNLESLSKLEQKGMPDYTLIYNPWPDHFAHFTGPFSDEILMPTGELNRLDYWLTQFTNTYKDAGVYDRTLWGMAGDHGL APVYYSLNPEKQVFEPLEKELGYPLVIKKISSDEGEGPKITNALNYESNKEVDVVVASTAGGNFMMDFFNSAQGWKVQPT YAELTTWTPVNALKGKSINVINEVASRLEESLDYLVVREKNCTLDECTVRIIGFKDDVRVDELITKKGDRLLYQPVIGSS QLLELDVLNPYKSQPNKAELASYQELYQRCMVSAKADKPTAWCTKAQWRALTAFSARPDSVNQLATLYEEDRAGTINLFP KFGVGFNTKVPGRHAGEHYLEKDAFLGFWGTPVGPNVTALTSEANGSLAPTLYEYLTQETVIENNNGWGYPSLLDDLDIQ PSK >Mature_963_residues MKNRSFSSIFILSVLSLSMLSANSSANVSAIPVIGGVVNSAEILKNQINASVIYTTKTVRDAAIFTIAGITLDAYILSLP LESDVKKSIIAKLSNPSYAIPLGHFLYTFVDKYGDMDNEDAFKAYLKTQYDEETLTGFSHSLFTLNEEDKEKEPELADSH HQGLTIDRKFIANMVIVYDELVQIGEWKDLDVLPERYTYLSDTPEDKKIIDKIQPIIIASMTKAVTGMNEGEMRATLEQI IEDGQPEHKGSVNNKAEALTITLIDFVRLNVLKSYRQFIYQEQRQEVLNEWLQARFKDNPDTLIAYLDSRQQRRLAVQVT VDGLQQGLLEGLVSPLKKPFIKQIYQDHLNHESYKPQNEITTQPEHEQQLSFLKRLTEKEYKDPSYLPFFTELYKNYDNS IVDVGISSTPTISVRNLPIIKTGAKVSGKGGTGIPNFHFVDRKEDRAYYFFGNDALQLDRLMEANKVQTMFDRLDYLVTL NCNAQYDWNAHTTYDGLVNLGAGESLRDFGEKRCLRELTQRAEIEKTVSTMRADLIEDIRVYDGIFALDIYSKLTQKWKI QQNLESLSKLEQKGMPDYTLIYNPWPDHFAHFTGPFSDEILMPTGELNRLDYWLTQFTNTYKDAGVYDRTLWGMAGDHGL APVYYSLNPEKQVFEPLEKELGYPLVIKKISSDEGEGPKITNALNYESNKEVDVVVASTAGGNFMMDFFNSAQGWKVQPT YAELTTWTPVNALKGKSINVINEVASRLEESLDYLVVREKNCTLDECTVRIIGFKDDVRVDELITKKGDRLLYQPVIGSS QLLELDVLNPYKSQPNKAELASYQELYQRCMVSAKADKPTAWCTKAQWRALTAFSARPDSVNQLATLYEEDRAGTINLFP KFGVGFNTKVPGRHAGEHYLEKDAFLGFWGTPVGPNVTALTSEANGSLAPTLYEYLTQETVIENNNGWGYPSLLDDLDIQ PSK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 109115; Mature: 109115
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNRSFSSIFILSVLSLSMLSANSSANVSAIPVIGGVVNSAEILKNQINASVIYTTKTVR CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCEEEEEECHHH DAAIFTIAGITLDAYILSLPLESDVKKSIIAKLSNPSYAIPLGHFLYTFVDKYGDMDNED HHHHHEEHHHHHEEHHEECCCHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHCCCCCHH AFKAYLKTQYDEETLTGFSHSLFTLNEEDKEKEPELADSHHQGLTIDRKFIANMVIVYDE HHHHHHHHCCCHHHHHCCCCEEEEECCCCCCCCCCHHCCCCCCCEEHHHHHHHHHHHHHH LVQIGEWKDLDVLPERYTYLSDTPEDKKIIDKIQPIIIASMTKAVTGMNEGEMRATLEQI HHHHCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH IEDGQPEHKGSVNNKAEALTITLIDFVRLNVLKSYRQFIYQEQRQEVLNEWLQARFKDNP HHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC DTLIAYLDSRQQRRLAVQVTVDGLQQGLLEGLVSPLKKPFIKQIYQDHLNHESYKPQNEI CCEEEECCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC TTQPEHEQQLSFLKRLTEKEYKDPSYLPFFTELYKNYDNSIVDVGISSTPTISVRNLPII CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEECCCCCCEEEECCCEEE KTGAKVSGKGGTGIPNFHFVDRKEDRAYYFFGNDALQLDRLMEANKVQTMFDRLDYLVTL ECCCEECCCCCCCCCCCEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCEEEEE NCNAQYDWNAHTTYDGLVNLGAGESLRDFGEKRCLRELTQRAEIEKTVSTMRADLIEDIR ECCCEECCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VYDGIFALDIYSKLTQKWKIQQNLESLSKLEQKGMPDYTLIYNPWPDHFAHFTGPFSDEI HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCCCCCCE LMPTGELNRLDYWLTQFTNTYKDAGVYDRTLWGMAGDHGLAPVYYSLNPEKQVFEPLEKE ECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHH LGYPLVIKKISSDEGEGPKITNALNYESNKEVDVVVASTAGGNFMMDFFNSAQGWKVQPT CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHCCCCCCEECCC YAELTTWTPVNALKGKSINVINEVASRLEESLDYLVVREKNCTLDECTVRIIGFKDDVRV HHHHEECCCCHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCEEEEEECCCCCCH DELITKKGDRLLYQPVIGSSQLLELDVLNPYKSQPNKAELASYQELYQRCMVSAKADKPT HHHHHCCCCEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC AWCTKAQWRALTAFSARPDSVNQLATLYEEDRAGTINLFPKFGVGFNTKVPGRHAGEHYL HHHCHHHHHEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHH EKDAFLGFWGTPVGPNVTALTSEANGSLAPTLYEYLTQETVIENNNGWGYPSLLDDLDIQ HHCCEEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHEEECCCCCCCCHHHHCCCCC PSK CCC >Mature Secondary Structure MKNRSFSSIFILSVLSLSMLSANSSANVSAIPVIGGVVNSAEILKNQINASVIYTTKTVR CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCEEEEEECHHH DAAIFTIAGITLDAYILSLPLESDVKKSIIAKLSNPSYAIPLGHFLYTFVDKYGDMDNED HHHHHEEHHHHHEEHHEECCCHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHCCCCCHH AFKAYLKTQYDEETLTGFSHSLFTLNEEDKEKEPELADSHHQGLTIDRKFIANMVIVYDE HHHHHHHHCCCHHHHHCCCCEEEEECCCCCCCCCCHHCCCCCCCEEHHHHHHHHHHHHHH LVQIGEWKDLDVLPERYTYLSDTPEDKKIIDKIQPIIIASMTKAVTGMNEGEMRATLEQI HHHHCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH IEDGQPEHKGSVNNKAEALTITLIDFVRLNVLKSYRQFIYQEQRQEVLNEWLQARFKDNP HHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC DTLIAYLDSRQQRRLAVQVTVDGLQQGLLEGLVSPLKKPFIKQIYQDHLNHESYKPQNEI CCEEEECCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC TTQPEHEQQLSFLKRLTEKEYKDPSYLPFFTELYKNYDNSIVDVGISSTPTISVRNLPII CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEECCCCCCEEEECCCEEE KTGAKVSGKGGTGIPNFHFVDRKEDRAYYFFGNDALQLDRLMEANKVQTMFDRLDYLVTL ECCCEECCCCCCCCCCCEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCEEEEE NCNAQYDWNAHTTYDGLVNLGAGESLRDFGEKRCLRELTQRAEIEKTVSTMRADLIEDIR ECCCEECCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VYDGIFALDIYSKLTQKWKIQQNLESLSKLEQKGMPDYTLIYNPWPDHFAHFTGPFSDEI HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCCCCCCE LMPTGELNRLDYWLTQFTNTYKDAGVYDRTLWGMAGDHGLAPVYYSLNPEKQVFEPLEKE ECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHH LGYPLVIKKISSDEGEGPKITNALNYESNKEVDVVVASTAGGNFMMDFFNSAQGWKVQPT CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHCCCCCCEECCC YAELTTWTPVNALKGKSINVINEVASRLEESLDYLVVREKNCTLDECTVRIIGFKDDVRV HHHHEECCCCHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCEEEEEECCCCCCH DELITKKGDRLLYQPVIGSSQLLELDVLNPYKSQPNKAELASYQELYQRCMVSAKADKPT HHHHHCCCCEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC AWCTKAQWRALTAFSARPDSVNQLATLYEEDRAGTINLFPKFGVGFNTKVPGRHAGEHYL HHHCHHHHHEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHH EKDAFLGFWGTPVGPNVTALTSEANGSLAPTLYEYLTQETVIENNNGWGYPSLLDDLDIQ HHCCEEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHEEECCCCCCCCHHHHCCCCC PSK CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA