Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694953

Identifier: 209694953

GI number: 209694953

Start: 1546052

End: 1548943

Strand: Direct

Name: 209694953

Synonym: VSAL_I1433

Alternate gene names: NA

Gene position: 1546052-1548943 (Clockwise)

Preceding gene: 209694952

Following gene: 209694954

Centisome position: 46.5

GC content: 40.39

Gene sequence:

>2892_bases
GTGAAAAACAGATCGTTTTCGTCAATATTTATTCTCAGTGTGCTATCTCTTTCAATGTTGAGTGCCAACAGTTCGGCCAA
TGTCAGTGCTATTCCTGTGATTGGTGGCGTAGTTAACTCAGCAGAAATACTAAAAAATCAGATAAACGCTTCGGTCATTT
ATACAACGAAAACGGTGCGTGATGCCGCTATTTTTACCATTGCTGGCATCACATTAGACGCTTACATTTTATCGCTACCA
TTGGAGAGTGATGTTAAGAAAAGCATCATTGCAAAGCTTTCAAATCCCTCATACGCGATCCCTTTAGGGCATTTTCTTTA
TACCTTTGTGGATAAATACGGAGATATGGATAATGAAGATGCTTTTAAAGCCTATTTGAAAACACAATATGATGAAGAAA
CACTCACCGGATTTAGTCATTCTTTATTTACTTTAAATGAGGAAGACAAAGAAAAGGAACCAGAGTTGGCGGATAGCCAT
CATCAAGGATTAACTATTGATCGTAAATTCATTGCGAACATGGTGATTGTTTATGATGAATTGGTACAGATTGGTGAGTG
GAAGGATCTTGACGTACTGCCTGAGCGTTATACGTACCTGTCTGATACCCCTGAAGATAAAAAGATCATCGATAAAATTC
AACCCATCATTATTGCGAGTATGACAAAAGCCGTCACGGGTATGAACGAAGGGGAGATGCGTGCTACGTTAGAGCAAATT
ATAGAAGATGGTCAGCCAGAGCATAAAGGCTCTGTAAATAATAAAGCGGAAGCATTAACGATTACTCTGATTGATTTTGT
TCGTCTTAATGTATTGAAATCGTACCGCCAGTTTATCTATCAAGAACAACGACAAGAAGTATTGAATGAGTGGTTACAAG
CGCGTTTTAAAGATAATCCAGATACGCTCATCGCTTATTTAGACTCTCGTCAGCAGCGTCGACTAGCAGTGCAAGTTACG
GTTGATGGATTGCAACAAGGGCTACTTGAAGGTCTTGTTTCTCCGCTGAAAAAGCCATTCATCAAACAGATCTATCAAGA
TCACCTTAACCATGAAAGCTACAAACCTCAGAATGAAATCACCACGCAGCCAGAACATGAGCAACAACTGTCATTCTTAA
AAAGATTGACCGAGAAAGAGTATAAAGACCCATCGTACTTGCCATTTTTTACTGAGCTGTATAAAAACTACGATAACAGC
ATTGTCGATGTGGGCATTTCATCAACACCGACTATCAGTGTTCGCAATTTACCGATAATAAAAACCGGCGCAAAAGTGTC
AGGTAAAGGCGGGACTGGGATACCAAATTTTCACTTTGTCGATAGAAAAGAAGATCGTGCCTATTATTTCTTTGGCAACG
ATGCGTTGCAACTTGACCGCTTGATGGAAGCGAACAAGGTTCAAACTATGTTTGATCGCTTGGATTATTTGGTGACTTTA
AACTGTAATGCGCAATATGATTGGAATGCACATACCACCTATGATGGCTTGGTGAATTTAGGGGCAGGTGAGAGCTTACG
AGATTTTGGTGAAAAGCGTTGTCTGCGAGAGTTGACACAACGTGCAGAAATAGAGAAAACAGTGTCGACCATGAGAGCCG
ATCTTATTGAAGACATTCGTGTTTATGACGGTATCTTTGCCTTGGATATTTACAGCAAGTTAACTCAAAAATGGAAGATC
CAACAAAACCTAGAATCCCTCTCGAAACTTGAACAAAAAGGGATGCCAGATTACACACTAATTTATAATCCATGGCCGGA
TCACTTTGCTCATTTCACTGGCCCGTTTAGTGATGAAATATTGATGCCGACCGGGGAGTTAAACCGATTAGATTATTGGT
TAACGCAATTTACCAACACATATAAAGACGCTGGCGTATACGATAGAACCTTATGGGGAATGGCAGGAGATCACGGTTTA
GCGCCTGTTTACTATTCATTGAATCCGGAAAAACAGGTATTTGAACCTCTTGAAAAAGAACTTGGCTATCCATTAGTGAT
AAAGAAAATCTCATCCGACGAAGGTGAAGGGCCTAAAATTACCAACGCGTTGAATTATGAAAGCAATAAAGAAGTCGATG
TGGTGGTCGCTTCTACTGCGGGTGGTAATTTTATGATGGATTTCTTTAATTCTGCCCAAGGTTGGAAAGTGCAACCAACG
TACGCTGAGCTAACAACGTGGACGCCTGTTAATGCGCTAAAAGGTAAGTCTATCAACGTGATTAATGAGGTTGCTTCACG
TTTAGAAGAATCGTTAGATTATCTCGTTGTTAGAGAAAAAAACTGCACGTTAGATGAATGTACAGTTCGAATTATCGGTT
TTAAAGACGATGTTAGAGTTGATGAATTAATCACTAAAAAAGGGGACCGATTACTGTATCAGCCTGTTATTGGATCATCC
CAGTTACTTGAACTCGATGTTCTGAATCCTTATAAATCGCAGCCAAATAAAGCTGAATTAGCATCATATCAAGAGTTATA
TCAACGATGTATGGTGTCTGCAAAGGCTGATAAGCCCACTGCGTGGTGCACTAAAGCGCAATGGCGAGCGCTGACTGCTT
TTTCTGCAAGACCCGATTCAGTCAATCAATTGGCTACATTGTATGAAGAAGACAGAGCAGGGACGATAAACTTGTTTCCT
AAATTTGGTGTTGGTTTTAATACCAAAGTACCGGGCAGACATGCTGGCGAACACTATTTAGAAAAAGATGCTTTTTTAGG
ATTCTGGGGAACCCCTGTAGGCCCTAATGTTACGGCATTAACGAGTGAGGCGAATGGGTCATTGGCGCCAACATTGTATG
AATATCTTACTCAAGAAACCGTTATCGAGAATAACAACGGCTGGGGTTATCCTTCTTTACTCGATGATCTGGATATACAA
CCGAGCAAATAG

Upstream 100 bases:

>100_bases
TGCAGTCTAAATAAGTCGTTGATGGTTCTTATGTACCAAAACCAATGCCAGTAATTATCAGCTCAATGACTTATCCAAAT
TGCTATAAAAGGAAGTTAAA

Downstream 100 bases:

>100_bases
ACAGAAGGTCGATTCCTCGATTAACTGAAGGCTTTATATTGTTCTTCGGCCTCGAAGGTAAGTTTCGCGGCTTCAATGGT
CATTAAGTTAATTGGTGTGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 963; Mature: 963

Protein sequence:

>963_residues
MKNRSFSSIFILSVLSLSMLSANSSANVSAIPVIGGVVNSAEILKNQINASVIYTTKTVRDAAIFTIAGITLDAYILSLP
LESDVKKSIIAKLSNPSYAIPLGHFLYTFVDKYGDMDNEDAFKAYLKTQYDEETLTGFSHSLFTLNEEDKEKEPELADSH
HQGLTIDRKFIANMVIVYDELVQIGEWKDLDVLPERYTYLSDTPEDKKIIDKIQPIIIASMTKAVTGMNEGEMRATLEQI
IEDGQPEHKGSVNNKAEALTITLIDFVRLNVLKSYRQFIYQEQRQEVLNEWLQARFKDNPDTLIAYLDSRQQRRLAVQVT
VDGLQQGLLEGLVSPLKKPFIKQIYQDHLNHESYKPQNEITTQPEHEQQLSFLKRLTEKEYKDPSYLPFFTELYKNYDNS
IVDVGISSTPTISVRNLPIIKTGAKVSGKGGTGIPNFHFVDRKEDRAYYFFGNDALQLDRLMEANKVQTMFDRLDYLVTL
NCNAQYDWNAHTTYDGLVNLGAGESLRDFGEKRCLRELTQRAEIEKTVSTMRADLIEDIRVYDGIFALDIYSKLTQKWKI
QQNLESLSKLEQKGMPDYTLIYNPWPDHFAHFTGPFSDEILMPTGELNRLDYWLTQFTNTYKDAGVYDRTLWGMAGDHGL
APVYYSLNPEKQVFEPLEKELGYPLVIKKISSDEGEGPKITNALNYESNKEVDVVVASTAGGNFMMDFFNSAQGWKVQPT
YAELTTWTPVNALKGKSINVINEVASRLEESLDYLVVREKNCTLDECTVRIIGFKDDVRVDELITKKGDRLLYQPVIGSS
QLLELDVLNPYKSQPNKAELASYQELYQRCMVSAKADKPTAWCTKAQWRALTAFSARPDSVNQLATLYEEDRAGTINLFP
KFGVGFNTKVPGRHAGEHYLEKDAFLGFWGTPVGPNVTALTSEANGSLAPTLYEYLTQETVIENNNGWGYPSLLDDLDIQ
PSK

Sequences:

>Translated_963_residues
MKNRSFSSIFILSVLSLSMLSANSSANVSAIPVIGGVVNSAEILKNQINASVIYTTKTVRDAAIFTIAGITLDAYILSLP
LESDVKKSIIAKLSNPSYAIPLGHFLYTFVDKYGDMDNEDAFKAYLKTQYDEETLTGFSHSLFTLNEEDKEKEPELADSH
HQGLTIDRKFIANMVIVYDELVQIGEWKDLDVLPERYTYLSDTPEDKKIIDKIQPIIIASMTKAVTGMNEGEMRATLEQI
IEDGQPEHKGSVNNKAEALTITLIDFVRLNVLKSYRQFIYQEQRQEVLNEWLQARFKDNPDTLIAYLDSRQQRRLAVQVT
VDGLQQGLLEGLVSPLKKPFIKQIYQDHLNHESYKPQNEITTQPEHEQQLSFLKRLTEKEYKDPSYLPFFTELYKNYDNS
IVDVGISSTPTISVRNLPIIKTGAKVSGKGGTGIPNFHFVDRKEDRAYYFFGNDALQLDRLMEANKVQTMFDRLDYLVTL
NCNAQYDWNAHTTYDGLVNLGAGESLRDFGEKRCLRELTQRAEIEKTVSTMRADLIEDIRVYDGIFALDIYSKLTQKWKI
QQNLESLSKLEQKGMPDYTLIYNPWPDHFAHFTGPFSDEILMPTGELNRLDYWLTQFTNTYKDAGVYDRTLWGMAGDHGL
APVYYSLNPEKQVFEPLEKELGYPLVIKKISSDEGEGPKITNALNYESNKEVDVVVASTAGGNFMMDFFNSAQGWKVQPT
YAELTTWTPVNALKGKSINVINEVASRLEESLDYLVVREKNCTLDECTVRIIGFKDDVRVDELITKKGDRLLYQPVIGSS
QLLELDVLNPYKSQPNKAELASYQELYQRCMVSAKADKPTAWCTKAQWRALTAFSARPDSVNQLATLYEEDRAGTINLFP
KFGVGFNTKVPGRHAGEHYLEKDAFLGFWGTPVGPNVTALTSEANGSLAPTLYEYLTQETVIENNNGWGYPSLLDDLDIQ
PSK
>Mature_963_residues
MKNRSFSSIFILSVLSLSMLSANSSANVSAIPVIGGVVNSAEILKNQINASVIYTTKTVRDAAIFTIAGITLDAYILSLP
LESDVKKSIIAKLSNPSYAIPLGHFLYTFVDKYGDMDNEDAFKAYLKTQYDEETLTGFSHSLFTLNEEDKEKEPELADSH
HQGLTIDRKFIANMVIVYDELVQIGEWKDLDVLPERYTYLSDTPEDKKIIDKIQPIIIASMTKAVTGMNEGEMRATLEQI
IEDGQPEHKGSVNNKAEALTITLIDFVRLNVLKSYRQFIYQEQRQEVLNEWLQARFKDNPDTLIAYLDSRQQRRLAVQVT
VDGLQQGLLEGLVSPLKKPFIKQIYQDHLNHESYKPQNEITTQPEHEQQLSFLKRLTEKEYKDPSYLPFFTELYKNYDNS
IVDVGISSTPTISVRNLPIIKTGAKVSGKGGTGIPNFHFVDRKEDRAYYFFGNDALQLDRLMEANKVQTMFDRLDYLVTL
NCNAQYDWNAHTTYDGLVNLGAGESLRDFGEKRCLRELTQRAEIEKTVSTMRADLIEDIRVYDGIFALDIYSKLTQKWKI
QQNLESLSKLEQKGMPDYTLIYNPWPDHFAHFTGPFSDEILMPTGELNRLDYWLTQFTNTYKDAGVYDRTLWGMAGDHGL
APVYYSLNPEKQVFEPLEKELGYPLVIKKISSDEGEGPKITNALNYESNKEVDVVVASTAGGNFMMDFFNSAQGWKVQPT
YAELTTWTPVNALKGKSINVINEVASRLEESLDYLVVREKNCTLDECTVRIIGFKDDVRVDELITKKGDRLLYQPVIGSS
QLLELDVLNPYKSQPNKAELASYQELYQRCMVSAKADKPTAWCTKAQWRALTAFSARPDSVNQLATLYEEDRAGTINLFP
KFGVGFNTKVPGRHAGEHYLEKDAFLGFWGTPVGPNVTALTSEANGSLAPTLYEYLTQETVIENNNGWGYPSLLDDLDIQ
PSK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 109115; Mature: 109115

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNRSFSSIFILSVLSLSMLSANSSANVSAIPVIGGVVNSAEILKNQINASVIYTTKTVR
CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCEEEEEECHHH
DAAIFTIAGITLDAYILSLPLESDVKKSIIAKLSNPSYAIPLGHFLYTFVDKYGDMDNED
HHHHHEEHHHHHEEHHEECCCHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHCCCCCHH
AFKAYLKTQYDEETLTGFSHSLFTLNEEDKEKEPELADSHHQGLTIDRKFIANMVIVYDE
HHHHHHHHCCCHHHHHCCCCEEEEECCCCCCCCCCHHCCCCCCCEEHHHHHHHHHHHHHH
LVQIGEWKDLDVLPERYTYLSDTPEDKKIIDKIQPIIIASMTKAVTGMNEGEMRATLEQI
HHHHCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
IEDGQPEHKGSVNNKAEALTITLIDFVRLNVLKSYRQFIYQEQRQEVLNEWLQARFKDNP
HHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DTLIAYLDSRQQRRLAVQVTVDGLQQGLLEGLVSPLKKPFIKQIYQDHLNHESYKPQNEI
CCEEEECCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
TTQPEHEQQLSFLKRLTEKEYKDPSYLPFFTELYKNYDNSIVDVGISSTPTISVRNLPII
CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEECCCCCCEEEECCCEEE
KTGAKVSGKGGTGIPNFHFVDRKEDRAYYFFGNDALQLDRLMEANKVQTMFDRLDYLVTL
ECCCEECCCCCCCCCCCEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCEEEEE
NCNAQYDWNAHTTYDGLVNLGAGESLRDFGEKRCLRELTQRAEIEKTVSTMRADLIEDIR
ECCCEECCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VYDGIFALDIYSKLTQKWKIQQNLESLSKLEQKGMPDYTLIYNPWPDHFAHFTGPFSDEI
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCCCCCCE
LMPTGELNRLDYWLTQFTNTYKDAGVYDRTLWGMAGDHGLAPVYYSLNPEKQVFEPLEKE
ECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHH
LGYPLVIKKISSDEGEGPKITNALNYESNKEVDVVVASTAGGNFMMDFFNSAQGWKVQPT
CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHCCCCCCEECCC
YAELTTWTPVNALKGKSINVINEVASRLEESLDYLVVREKNCTLDECTVRIIGFKDDVRV
HHHHEECCCCHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCEEEEEECCCCCCH
DELITKKGDRLLYQPVIGSSQLLELDVLNPYKSQPNKAELASYQELYQRCMVSAKADKPT
HHHHHCCCCEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
AWCTKAQWRALTAFSARPDSVNQLATLYEEDRAGTINLFPKFGVGFNTKVPGRHAGEHYL
HHHCHHHHHEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHH
EKDAFLGFWGTPVGPNVTALTSEANGSLAPTLYEYLTQETVIENNNGWGYPSLLDDLDIQ
HHCCEEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHEEECCCCCCCCHHHHCCCCC
PSK
CCC
>Mature Secondary Structure
MKNRSFSSIFILSVLSLSMLSANSSANVSAIPVIGGVVNSAEILKNQINASVIYTTKTVR
CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCEEEEEECHHH
DAAIFTIAGITLDAYILSLPLESDVKKSIIAKLSNPSYAIPLGHFLYTFVDKYGDMDNED
HHHHHEEHHHHHEEHHEECCCHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHCCCCCHH
AFKAYLKTQYDEETLTGFSHSLFTLNEEDKEKEPELADSHHQGLTIDRKFIANMVIVYDE
HHHHHHHHCCCHHHHHCCCCEEEEECCCCCCCCCCHHCCCCCCCEEHHHHHHHHHHHHHH
LVQIGEWKDLDVLPERYTYLSDTPEDKKIIDKIQPIIIASMTKAVTGMNEGEMRATLEQI
HHHHCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
IEDGQPEHKGSVNNKAEALTITLIDFVRLNVLKSYRQFIYQEQRQEVLNEWLQARFKDNP
HHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DTLIAYLDSRQQRRLAVQVTVDGLQQGLLEGLVSPLKKPFIKQIYQDHLNHESYKPQNEI
CCEEEECCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
TTQPEHEQQLSFLKRLTEKEYKDPSYLPFFTELYKNYDNSIVDVGISSTPTISVRNLPII
CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEECCCCCCEEEECCCEEE
KTGAKVSGKGGTGIPNFHFVDRKEDRAYYFFGNDALQLDRLMEANKVQTMFDRLDYLVTL
ECCCEECCCCCCCCCCCEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCEEEEE
NCNAQYDWNAHTTYDGLVNLGAGESLRDFGEKRCLRELTQRAEIEKTVSTMRADLIEDIR
ECCCEECCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VYDGIFALDIYSKLTQKWKIQQNLESLSKLEQKGMPDYTLIYNPWPDHFAHFTGPFSDEI
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCCCCCCE
LMPTGELNRLDYWLTQFTNTYKDAGVYDRTLWGMAGDHGLAPVYYSLNPEKQVFEPLEKE
ECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHH
LGYPLVIKKISSDEGEGPKITNALNYESNKEVDVVVASTAGGNFMMDFFNSAQGWKVQPT
CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHCCCCCCEECCC
YAELTTWTPVNALKGKSINVINEVASRLEESLDYLVVREKNCTLDECTVRIIGFKDDVRV
HHHHEECCCCHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCEEEEEECCCCCCH
DELITKKGDRLLYQPVIGSSQLLELDVLNPYKSQPNKAELASYQELYQRCMVSAKADKPT
HHHHHCCCCEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
AWCTKAQWRALTAFSARPDSVNQLATLYEEDRAGTINLFPKFGVGFNTKVPGRHAGEHYL
HHHCHHHHHEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHH
EKDAFLGFWGTPVGPNVTALTSEANGSLAPTLYEYLTQETVIENNNGWGYPSLLDDLDIQ
HHCCEEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHEEECCCCCCCCHHHHCCCCC
PSK
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA