Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
---|---|
Accession | NC_011312 |
Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209694934
Identifier: 209694934
GI number: 209694934
Start: 1528352
End: 1528810
Strand: Direct
Name: 209694934
Synonym: VSAL_I1411
Alternate gene names: NA
Gene position: 1528352-1528810 (Clockwise)
Preceding gene: 209694932
Following gene: 209694935
Centisome position: 45.96
GC content: 38.56
Gene sequence:
>459_bases ATGCCAAATAAAGACGCTATTTTTCAACAGTTATTTCTCAGAGAGACGCAGGGAGCTCCCATTGTGGATCGTGAGTCTGT GCCTTTGAATCATACCCATAAGCAAGATTATGAAAAATGGCTTGCAGAAAAGCGAGACTTTACGATTGAAGAGATCGACG AATCGCATTGGATTAAATCATGTACTGCTGGTTACATTACGGAAGTGATTTTTAAAGAGAGTGGCAGCTTAACTGAGTTC ACTCTATTTGAAAGGTTGAAAACGGTAGGGCATTGGCAATTAAAGGAAGGCTTAGTGTATGTTTCGATCTTTAAAGGTGA GAATCAATACGATTTTGTGATTGTGGCGAACGCTAACGTACATATTCATTCCGCAATAGAATATAAAAATGACGAGATCC ACTCTTATTTGAAGTTAGCACAAACAAGAGTGCCGTATAGATTATCGCAATCTCATTGA
Upstream 100 bases:
>100_bases GTGGTTTTTATTTATATAATTACGCTATGATGAATTTAGAACTTGAGGGTATTAAAGCTAAGATCGTATTTTTAATGTCG AGCTTTAAAGGAGATAAATA
Downstream 100 bases:
>100_bases TGAACTAAGCAGATGTTTTTTGAAAGATGAAAAAATGATGTATATCATAGTGATTCTTCATTGATCCTGTAACAATGACT ATTACGTTTTATACCATGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 152; Mature: 151
Protein sequence:
>152_residues MPNKDAIFQQLFLRETQGAPIVDRESVPLNHTHKQDYEKWLAEKRDFTIEEIDESHWIKSCTAGYITEVIFKESGSLTEF TLFERLKTVGHWQLKEGLVYVSIFKGENQYDFVIVANANVHIHSAIEYKNDEIHSYLKLAQTRVPYRLSQSH
Sequences:
>Translated_152_residues MPNKDAIFQQLFLRETQGAPIVDRESVPLNHTHKQDYEKWLAEKRDFTIEEIDESHWIKSCTAGYITEVIFKESGSLTEF TLFERLKTVGHWQLKEGLVYVSIFKGENQYDFVIVANANVHIHSAIEYKNDEIHSYLKLAQTRVPYRLSQSH >Mature_151_residues PNKDAIFQQLFLRETQGAPIVDRESVPLNHTHKQDYEKWLAEKRDFTIEEIDESHWIKSCTAGYITEVIFKESGSLTEFT LFERLKTVGHWQLKEGLVYVSIFKGENQYDFVIVANANVHIHSAIEYKNDEIHSYLKLAQTRVPYRLSQSH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17814; Mature: 17683
Theoretical pI: Translated: 6.30; Mature: 6.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNKDAIFQQLFLRETQGAPIVDRESVPLNHTHKQDYEKWLAEKRDFTIEEIDESHWIKS CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCHHHHHHH CTAGYITEVIFKESGSLTEFTLFERLKTVGHWQLKEGLVYVSIFKGENQYDFVIVANANV HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEECCCEEEEEEEECCCCEEEEEEEECCE HIHSAIEYKNDEIHSYLKLAQTRVPYRLSQSH EEEEEEECCCHHHHHHHHHHHHCCCEEECCCC >Mature Secondary Structure PNKDAIFQQLFLRETQGAPIVDRESVPLNHTHKQDYEKWLAEKRDFTIEEIDESHWIKS CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCHHHHHHH CTAGYITEVIFKESGSLTEFTLFERLKTVGHWQLKEGLVYVSIFKGENQYDFVIVANANV HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEECCCEEEEEEEECCCCEEEEEEEECCE HIHSAIEYKNDEIHSYLKLAQTRVPYRLSQSH EEEEEEECCCHHHHHHHHHHHHCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA