Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694358
Identifier: 209694358
GI number: 209694358
Start: 862454
End: 863467
Strand: Reverse
Name: 209694358
Synonym: VSAL_I0775
Alternate gene names: NA
Gene position: 863467-862454 (Counterclockwise)
Preceding gene: 209694359
Following gene: 209694356
Centisome position: 25.97
GC content: 30.57
Gene sequence:
>1014_bases ATGAAAAAGAACTTAATTGCATTAGTTTTAATGGCTTTTACTTTTAACACATACGCATCTGTAGATTCTCCATTAAGTAA GAGAATTCAAAATTTGAATAATATTATGATATCGAGTCATAGTGTGAGGGCCGACATCATCTCAGGGGATTTTGATGCTG TATTCTCTCTTTACGATAACATTGAATCTGAAAAAATAAATATGCAACATTTTTCACCAACGATAGGTACGACGGATGTG GTCAATAAACTGGCTGATGATCAGCGTAATATTATTGATTATGCATATAATACAGTTAAGAATAACACGGGAAAAATCAT ACCAAGAAGAAATAATAATTATAAGCCTAATGGACTGATTGTCTTGGGGTCAACGCCTAAATTAGGTATTTTGGAGAGTC GATTAAATCAGGCTTATACGCTAGCGATTAAATATCCAAACATGCCTATTATATTATCAGGTAAAGGTCGAAAAAATAAT GTTATAGAAGCTGACTATATGTACGATTATCTGAAAGATAAAGGGATAGAAACAAAACGTATGTATAAAGAATCAGAATC GTTAGATACTGTTGGAAATGCGGAGTTTTCTTATTTTACAATTCAAGAAAATCCATCATTAAATAAAATAAAAAATTGGT TAGTTATAACGAATAACTACCACGCTATGCGTTCTTTATTTAATTTTTCACGTATCTTCCCAGAGAGTTATACCATATCT GTTTTACTTGCCCCTTTACTCCCTGATGGAATAACTAATCCTGATGAAGATAAAATACTTAAAAACCTTATTGGTAAGGA AATTAAGTCTGATTCTAACGAACAATTTATGGAGTTACTCCGATATAACCGTTATAGCATTAATAGACATAAATTTAAAA GTCAAAATTTAACAGGTAAGCCATGTGCGATTCTGAATGAAATATTATTAGAGCATGGATTATATAAAGATAATGTCGAT AAATTTACGAATAAATTCAGTCAATGTTATGAAGGCTTAGATAATAATCAATAG
Upstream 100 bases:
>100_bases TGAATATTTTCTCTTATAAGTACTGATTGCGACAATTACCTTCATACTTAAAGATAAACAAACCAATTCTATTAATTTAA ATAATCATTATTGAGGTTTT
Downstream 100 bases:
>100_bases ATTATATCGCATCTAGTAGCCTCTGACACAAAATTAAAACCCATAACGTTATCATCGATATCCTAGTTGTCGATGATAAC GATAAATCGGGAGATCTTCA
Product: phage protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 337; Mature: 337
Protein sequence:
>337_residues MKKNLIALVLMAFTFNTYASVDSPLSKRIQNLNNIMISSHSVRADIISGDFDAVFSLYDNIESEKINMQHFSPTIGTTDV VNKLADDQRNIIDYAYNTVKNNTGKIIPRRNNNYKPNGLIVLGSTPKLGILESRLNQAYTLAIKYPNMPIILSGKGRKNN VIEADYMYDYLKDKGIETKRMYKESESLDTVGNAEFSYFTIQENPSLNKIKNWLVITNNYHAMRSLFNFSRIFPESYTIS VLLAPLLPDGITNPDEDKILKNLIGKEIKSDSNEQFMELLRYNRYSINRHKFKSQNLTGKPCAILNEILLEHGLYKDNVD KFTNKFSQCYEGLDNNQ
Sequences:
>Translated_337_residues MKKNLIALVLMAFTFNTYASVDSPLSKRIQNLNNIMISSHSVRADIISGDFDAVFSLYDNIESEKINMQHFSPTIGTTDV VNKLADDQRNIIDYAYNTVKNNTGKIIPRRNNNYKPNGLIVLGSTPKLGILESRLNQAYTLAIKYPNMPIILSGKGRKNN VIEADYMYDYLKDKGIETKRMYKESESLDTVGNAEFSYFTIQENPSLNKIKNWLVITNNYHAMRSLFNFSRIFPESYTIS VLLAPLLPDGITNPDEDKILKNLIGKEIKSDSNEQFMELLRYNRYSINRHKFKSQNLTGKPCAILNEILLEHGLYKDNVD KFTNKFSQCYEGLDNNQ >Mature_337_residues MKKNLIALVLMAFTFNTYASVDSPLSKRIQNLNNIMISSHSVRADIISGDFDAVFSLYDNIESEKINMQHFSPTIGTTDV VNKLADDQRNIIDYAYNTVKNNTGKIIPRRNNNYKPNGLIVLGSTPKLGILESRLNQAYTLAIKYPNMPIILSGKGRKNN VIEADYMYDYLKDKGIETKRMYKESESLDTVGNAEFSYFTIQENPSLNKIKNWLVITNNYHAMRSLFNFSRIFPESYTIS VLLAPLLPDGITNPDEDKILKNLIGKEIKSDSNEQFMELLRYNRYSINRHKFKSQNLTGKPCAILNEILLEHGLYKDNVD KFTNKFSQCYEGLDNNQ
Specific function: Unknown
COG id: COG1434
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38621; Mature: 38621
Theoretical pI: Translated: 9.00; Mature: 9.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKNLIALVLMAFTFNTYASVDSPLSKRIQNLNNIMISSHSVRADIISGDFDAVFSLYDN CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCCEEEEECCCHHHHHHHHHC IESEKINMQHFSPTIGTTDVVNKLADDQRNIIDYAYNTVKNNTGKIIPRRNNNYKPNGLI CCCCEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCEE VLGSTPKLGILESRLNQAYTLAIKYPNMPIILSGKGRKNNVIEADYMYDYLKDKGIETKR EECCCCCCHHHHHHCCCEEEEEEECCCCCEEEECCCCCCCCEEHHHHHHHHHHCCCCHHH MYKESESLDTVGNAEFSYFTIQENPSLNKIKNWLVITNNYHAMRSLFNFSRIFPESYTIS HHHHHHCCCCCCCCCEEEEEEECCCCHHHHCCEEEEECCHHHHHHHHHHHHHCCCCEEHH VLLAPLLPDGITNPDEDKILKNLIGKEIKSDSNEQFMELLRYNRYSINRHKFKSQNLTGK HHEEHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHCCCCCCCC PCAILNEILLEHGLYKDNVDKFTNKFSQCYEGLDNNQ HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MKKNLIALVLMAFTFNTYASVDSPLSKRIQNLNNIMISSHSVRADIISGDFDAVFSLYDN CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCCEEEEECCCHHHHHHHHHC IESEKINMQHFSPTIGTTDVVNKLADDQRNIIDYAYNTVKNNTGKIIPRRNNNYKPNGLI CCCCEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCEE VLGSTPKLGILESRLNQAYTLAIKYPNMPIILSGKGRKNNVIEADYMYDYLKDKGIETKR EECCCCCCHHHHHHCCCEEEEEEECCCCCEEEECCCCCCCCEEHHHHHHHHHHCCCCHHH MYKESESLDTVGNAEFSYFTIQENPSLNKIKNWLVITNNYHAMRSLFNFSRIFPESYTIS HHHHHHCCCCCCCCCEEEEEEECCCCHHHHCCEEEEECCHHHHHHHHHHHHHCCCCEEHH VLLAPLLPDGITNPDEDKILKNLIGKEIKSDSNEQFMELLRYNRYSINRHKFKSQNLTGK HHEEHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHCCCCCCCC PCAILNEILLEHGLYKDNVDKFTNKFSQCYEGLDNNQ HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA