Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694352
Identifier: 209694352
GI number: 209694352
Start: 855807
End: 856337
Strand: Reverse
Name: 209694352
Synonym: VSAL_I0768
Alternate gene names: NA
Gene position: 856337-855807 (Counterclockwise)
Preceding gene: 209694353
Following gene: 209694351
Centisome position: 25.75
GC content: 43.88
Gene sequence:
>531_bases ATGCGATTAACTAACCCTGAGCACTTAACCTCGATGTTGGAGAATGTCGCATTAAACCCAAGACAACAATTTCAACTTAA CCAAAAACTGGCCAATCATTCACGCCGGTTCTTTCGATCGCAAATTAGCCATCAGCGAGACATTGATAATACCCCATACC AATCTCGAACTCGGCGCACTAAAAAGCAACAGGCGGATCCTAAGGTGGTACTCAATACAAAAAGCAACCGGAATATGCTG ATGGGATTGAGTCGATCGTTAAGAACAAACGTGACTGGAGAGGCGTTTGAGGTGGGGTTAACGGGTATCCCAGCAAAGAT TGGACGAGAGCATAATGAAGGTCAAACCTTATCCTTTACCACTCACGTTAATGGTTTTTATGACTCAAAAACCAGTCGAT GGAAAGGCGGAGTTAAGACCAAGAATAACTATCGAATGCCAAAGCGAACCTTCATCGGTTGGACCCCCTCTCTGGAGCGT GAATTGATGACCATGATAAGGGATGAATTAGTCATAAATATGGAGCCATAA
Upstream 100 bases:
>100_bases GCATTCGTTTTGATTGCGTCAGTGATTTTGCCCTTGCCGCAATTGAAGAAGAGCTGCCTCTTCTTGAGTTTGTGGGCGCT CATGATAGGGACTTACCTGA
Downstream 100 bases:
>100_bases ATGCGTGAAATAAAAATCAAACCAACCAATAAAGACGTACTGGTGCGCGATCCTATTACGCGAGTGCCATTGAACGTTAA GGGCGAAGTAAAACCCCGTA
Product: phage protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 176; Mature: 176
Protein sequence:
>176_residues MRLTNPEHLTSMLENVALNPRQQFQLNQKLANHSRRFFRSQISHQRDIDNTPYQSRTRRTKKQQADPKVVLNTKSNRNML MGLSRSLRTNVTGEAFEVGLTGIPAKIGREHNEGQTLSFTTHVNGFYDSKTSRWKGGVKTKNNYRMPKRTFIGWTPSLER ELMTMIRDELVINMEP
Sequences:
>Translated_176_residues MRLTNPEHLTSMLENVALNPRQQFQLNQKLANHSRRFFRSQISHQRDIDNTPYQSRTRRTKKQQADPKVVLNTKSNRNML MGLSRSLRTNVTGEAFEVGLTGIPAKIGREHNEGQTLSFTTHVNGFYDSKTSRWKGGVKTKNNYRMPKRTFIGWTPSLER ELMTMIRDELVINMEP >Mature_176_residues MRLTNPEHLTSMLENVALNPRQQFQLNQKLANHSRRFFRSQISHQRDIDNTPYQSRTRRTKKQQADPKVVLNTKSNRNML MGLSRSLRTNVTGEAFEVGLTGIPAKIGREHNEGQTLSFTTHVNGFYDSKTSRWKGGVKTKNNYRMPKRTFIGWTPSLER ELMTMIRDELVINMEP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20476; Mature: 20476
Theoretical pI: Translated: 11.40; Mature: 11.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLTNPEHLTSMLENVALNPRQQFQLNQKLANHSRRFFRSQISHQRDIDNTPYQSRTRRT CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH KKQQADPKVVLNTKSNRNMLMGLSRSLRTNVTGEAFEVGLTGIPAKIGREHNEGQTLSFT HHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHCCCCCCCCEEEEE THVNGFYDSKTSRWKGGVKTKNNYRMPKRTFIGWTPSLERELMTMIRDELVINMEP EECCCEECCCCCHHCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHEEECCC >Mature Secondary Structure MRLTNPEHLTSMLENVALNPRQQFQLNQKLANHSRRFFRSQISHQRDIDNTPYQSRTRRT CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH KKQQADPKVVLNTKSNRNMLMGLSRSLRTNVTGEAFEVGLTGIPAKIGREHNEGQTLSFT HHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHCCCCCCCCEEEEE THVNGFYDSKTSRWKGGVKTKNNYRMPKRTFIGWTPSLERELMTMIRDELVINMEP EECCCEECCCCCHHCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA