Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

Click here to switch to the map view.

The map label for this gene is 209694339

Identifier: 209694339

GI number: 209694339

Start: 841969

End: 842460

Strand: Direct

Name: 209694339

Synonym: VSAL_I0751

Alternate gene names: NA

Gene position: 841969-842460 (Clockwise)

Preceding gene: 209694338

Following gene: 209694340

Centisome position: 25.32

GC content: 37.4

Gene sequence:

>492_bases
ATGTTACTTAATGAGGTTTTTATGATTTACGCCATTCCAAGTCATCGAGATAAAATCGCCCCCCATTTTTCTAAAGCTGA
GCAGTTTTTAATTCTGGATGATAGAAAAGGAAGGTCTATTTCTATTGATAATCCGGCGAAGGTGATTACTGGCTGCAAAG
GAAAGAAAGCATTATTGGACATGTTAATAATGAATGGAGTTGAAGCGGTGGTGGTTCGTAATATCGGAGAGCGATTATTA
ACTAAGTTATTGAGCCGTAATGTGGATATTTACCAAGCAACAAGAATGAGTCAATTGTCTTCAATTCATCCCTCTGGGTT
AGAAAAAATTATGGATTGCAGTGCTGCAAAACAATCTATAAATCATTTAAATAAAGTGGGGTGCTCTGAGGGGCGAAAAA
CAGAAAGAACTCAAGCAAAAATATTAGCGCCTCGTTTGATTGGAGTAGTCGCTAAAATGCTTAATTTCCGTAAAGGTGAG
GAGGGATTATGA

Upstream 100 bases:

>100_bases
TATTAAAAACCGTTGGGATGAAAATCTCAGCGGTTTTTTTATGTGTAAAATATGAGTTATTGGCTTATGCCAATAATTAG
GTGTATGGTGTGATCATTCA

Downstream 100 bases:

>100_bases
TGACATTCATGGTGACTTTTTGTGTTTTTTTAGCCGTGATTTTAATGATGGCCATCGGCGTTATTTTTCACCGACAAAGT
ATTAAAGGCAGTTGCGGAGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MLLNEVFMIYAIPSHRDKIAPHFSKAEQFLILDDRKGRSISIDNPAKVITGCKGKKALLDMLIMNGVEAVVVRNIGERLL
TKLLSRNVDIYQATRMSQLSSIHPSGLEKIMDCSAAKQSINHLNKVGCSEGRKTERTQAKILAPRLIGVVAKMLNFRKGE
EGL

Sequences:

>Translated_163_residues
MLLNEVFMIYAIPSHRDKIAPHFSKAEQFLILDDRKGRSISIDNPAKVITGCKGKKALLDMLIMNGVEAVVVRNIGERLL
TKLLSRNVDIYQATRMSQLSSIHPSGLEKIMDCSAAKQSINHLNKVGCSEGRKTERTQAKILAPRLIGVVAKMLNFRKGE
EGL
>Mature_163_residues
MLLNEVFMIYAIPSHRDKIAPHFSKAEQFLILDDRKGRSISIDNPAKVITGCKGKKALLDMLIMNGVEAVVVRNIGERLL
TKLLSRNVDIYQATRMSQLSSIHPSGLEKIMDCSAAKQSINHLNKVGCSEGRKTERTQAKILAPRLIGVVAKMLNFRKGE
EGL

Specific function: Unknown

COG id: COG1433

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18114; Mature: 18114

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLNEVFMIYAIPSHRDKIAPHFSKAEQFLILDDRKGRSISIDNPAKVITGCKGKKALLD
CCHHHEEEEEECCCCCCCCCCCHHCCCEEEEEECCCCCEECCCCCHHHHHCCCCHHHHHH
MLIMNGVEAVVVRNIGERLLTKLLSRNVDIYQATRMSQLSSIHPSGLEKIMDCSAAKQSI
HHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
NHLNKVGCSEGRKTERTQAKILAPRLIGVVAKMLNFRKGEEGL
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLLNEVFMIYAIPSHRDKIAPHFSKAEQFLILDDRKGRSISIDNPAKVITGCKGKKALLD
CCHHHEEEEEECCCCCCCCCCCHHCCCEEEEEECCCCCEECCCCCHHHHHCCCCHHHHHH
MLIMNGVEAVVVRNIGERLLTKLLSRNVDIYQATRMSQLSSIHPSGLEKIMDCSAAKQSI
HHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
NHLNKVGCSEGRKTERTQAKILAPRLIGVVAKMLNFRKGEEGL
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA