Click here to switch to the map view.

The map label for this gene is rimM

Identifier: 209694241

GI number: 209694241

Start: 723147

End: 723674

Strand: Direct

Name: rimM

Synonym: VSAL_I0650

Alternate gene names: 209694241

Gene position: 723147-723674 (Clockwise)

Preceding gene: 209694240

Following gene: 209694242

Centisome position: 21.75

GC content: 40.34

Gene sequence:

>528_bases
ATGAGTAAGCAAGACGAAGTAATTGTTGTAGGTAAGTTCGGTGCTTCCTATGGCATTCGTGGATGGTTGAAAGTAGTTTC
TTTTACTGATCAACCTGAAAGCATTTTCGACTACAAACCTTTACTTATTAAAGTAAAAGATGAGTGGGTCGAGTTTTCAG
TCGAAAGCTGGAAACGTCATAAAGGTTTGGTGTGCAAACTGGAAGGGTTAGAAGTTAGAGAAGAAGCTCAAGCTTATACT
AACCTGGAAATTGCAGTTAAAGCAGATGCACTACCTGAGCTGTCAGAAGATGAATTCTACTGGCGTGAATTGTTTGGTAT
GGAAGTGGTTACAAGCCAAGGTTACGGCCTAGGTATTGTTGACGACATCTTTGAAACCGGATCAAACGATGTTCTTGTAG
TCAAAGCAAACCTGAAAGATGCTTTTGGTAAAAAGGAACGTTTGATTCCTTTTATTGATGAGCAAGTGATCAAAGTAATT
GATCGTGAGGCTCAACGGATCGAAGTTGACTGGGATCCTGGGTTCTAA

Upstream 100 bases:

>100_bases
ATTGGGTTGGTTTAGGCGCTGGTCTTTCTGATCGTGTAGCTAAGCTAGTTAAAGACGCTAACAAAGCGGCTTAATTTAGT
TGGTTAAAGGTAAAGATTTT

Downstream 100 bases:

>100_bases
ACCCTAGGTAAAGCGAGGGCACATGTGGGTTGGGGTTATAAGCCTATTTCCTGAAATGTTCCGTTCGGTTACCGATTTTG
GGGTAACTAGCCAAGCAATT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MSKQDEVIVVGKFGASYGIRGWLKVVSFTDQPESIFDYKPLLIKVKDEWVEFSVESWKRHKGLVCKLEGLEVREEAQAYT
NLEIAVKADALPELSEDEFYWRELFGMEVVTSQGYGLGIVDDIFETGSNDVLVVKANLKDAFGKKERLIPFIDEQVIKVI
DREAQRIEVDWDPGF

Sequences:

>Translated_175_residues
MSKQDEVIVVGKFGASYGIRGWLKVVSFTDQPESIFDYKPLLIKVKDEWVEFSVESWKRHKGLVCKLEGLEVREEAQAYT
NLEIAVKADALPELSEDEFYWRELFGMEVVTSQGYGLGIVDDIFETGSNDVLVVKANLKDAFGKKERLIPFIDEQVIKVI
DREAQRIEVDWDPGF
>Mature_174_residues
SKQDEVIVVGKFGASYGIRGWLKVVSFTDQPESIFDYKPLLIKVKDEWVEFSVESWKRHKGLVCKLEGLEVREEAQAYTN
LEIAVKADALPELSEDEFYWRELFGMEVVTSQGYGLGIVDDIFETGSNDVLVVKANLKDAFGKKERLIPFIDEQVIKVID
REAQRIEVDWDPGF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=169, Percent_Identity=56.8047337278106, Blast_Score=202, Evalue=1e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_ALISL (B6EGC0)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002262169.1
- ProteinModelPortal:   B6EGC0
- GeneID:   6989203
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I0650
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- ProtClustDB:   PRK00122
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20040; Mature: 19909

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQDEVIVVGKFGASYGIRGWLKVVSFTDQPESIFDYKPLLIKVKDEWVEFSVESWKRH
CCCCCCEEEEECCCCCCCHHHEEEEEECCCCCCHHCCCCCEEEEEECHHEEECHHHHHCC
KGLVCKLEGLEVREEAQAYTNLEIAVKADALPELSEDEFYWRELFGMEVVTSQGYGLGIV
CCEEEEEECCCHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHCEEEEECCCCCCCHH
DDIFETGSNDVLVVKANLKDAFGKKERLIPFIDEQVIKVIDREAQRIEVDWDPGF
HHHHHCCCCCEEEEEECCCHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCC
>Mature Secondary Structure 
SKQDEVIVVGKFGASYGIRGWLKVVSFTDQPESIFDYKPLLIKVKDEWVEFSVESWKRH
CCCCCEEEEECCCCCCCHHHEEEEEECCCCCCHHCCCCCEEEEEECHHEEECHHHHHCC
KGLVCKLEGLEVREEAQAYTNLEIAVKADALPELSEDEFYWRELFGMEVVTSQGYGLGIV
CCEEEEEECCCHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHCEEEEECCCCCCCHH
DDIFETGSNDVLVVKANLKDAFGKKERLIPFIDEQVIKVIDREAQRIEVDWDPGF
HHHHHCCCCCEEEEEECCCHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA