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The map label for this gene is smp [H]

Identifier: 209694214

GI number: 209694214

Start: 685836

End: 686435

Strand: Reverse

Name: smp [H]

Synonym: VSAL_I0623

Alternate gene names: 209694214

Gene position: 686435-685836 (Counterclockwise)

Preceding gene: 209694216

Following gene: 209694202

Centisome position: 20.64

GC content: 37.33

Gene sequence:

>600_bases
ATGATGCTTTCTCAAAATCTCATAATTAAAAGCCTGATGCTGCTCTCTCTGATCGCATTCAGTTACTTTATTTTAATTAA
TAGTACGGTGATCAGTGATAATAATCAGATCATTCAAAATAAACAGTTACAAGATCTTAGTCGAACCATGACAAGACAAG
CAGCATTGTTTGCTGTCGATAGCATCAAAAAAGACGATCACGAAGCCTTGCTGCAACTAACGAATAATCTGGCAAAAGAA
AACCTTGTGTTTGATGCTACGATTTACGACGCGGAAGGTGGTGTACTAAGTAAAAGCAGCAATGCGTTAACCGCATCACA
AATTACGGGCATTAATACACCATTATCGATTGATGGCATCGGTCGACAACAATTAATCGAACCAATAGTAAAAGACGATC
GGGTATTGGGGTTTTTACGTATAACCTTTGAAAAGTCAACGTTGACTGGTTTTGCGAACCACCATTACCGTAAAAGTGAC
CGATTGATGTTTGGTATGCTTATTATAAGTCTTGTTTCAGGTATGTTTATTATGGCAATACTTAAAAAACGTGAAGATTC
TAGCAAGCCTGTTACTACACTTTTTGGCGGTAAGTCTTAA

Upstream 100 bases:

>100_bases
AATACCGATTGAAATTAGATAGAGCAAGTCTGAAGCGACATAAACTGCTATTTTTGTATAAATTGCGTATAATTCTCGAC
TATTATTTTATTTGGTGCGG

Downstream 100 bases:

>100_bases
TACGTTCTGTTTATTTCACAGATAAATAATAAAAAGGCGATGTTAATAAATAACACCGCCTTTTTTTCACTACAAATAAT
GTGACATTATTTGTCTCCAA

Product: peripheral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MMLSQNLIIKSLMLLSLIAFSYFILINSTVISDNNQIIQNKQLQDLSRTMTRQAALFAVDSIKKDDHEALLQLTNNLAKE
NLVFDATIYDAEGGVLSKSSNALTASQITGINTPLSIDGIGRQQLIEPIVKDDRVLGFLRITFEKSTLTGFANHHYRKSD
RLMFGMLIISLVSGMFIMAILKKREDSSKPVTTLFGGKS

Sequences:

>Translated_199_residues
MMLSQNLIIKSLMLLSLIAFSYFILINSTVISDNNQIIQNKQLQDLSRTMTRQAALFAVDSIKKDDHEALLQLTNNLAKE
NLVFDATIYDAEGGVLSKSSNALTASQITGINTPLSIDGIGRQQLIEPIVKDDRVLGFLRITFEKSTLTGFANHHYRKSD
RLMFGMLIISLVSGMFIMAILKKREDSSKPVTTLFGGKS
>Mature_199_residues
MMLSQNLIIKSLMLLSLIAFSYFILINSTVISDNNQIIQNKQLQDLSRTMTRQAALFAVDSIKKDDHEALLQLTNNLAKE
NLVFDATIYDAEGGVLSKSSNALTASQITGINTPLSIDGIGRQQLIEPIVKDDRVLGFLRITFEKSTLTGFANHHYRKSD
RLMFGMLIISLVSGMFIMAILKKREDSSKPVTTLFGGKS

Specific function: Unknown

COG id: COG3726

COG function: function code R; Uncharacterized membrane protein affecting hemolysin expression

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smp family [H]

Homologues:

Organism=Escherichia coli, GI1790847, Length=152, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019305 [H]

Pfam domain/function: PF10144 SMP_2 [H]

EC number: NA

Molecular weight: Translated: 22101; Mature: 22101

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS00589 PTS_HPR_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLSQNLIIKSLMLLSLIAFSYFILINSTVISDNNQIIQNKQLQDLSRTMTRQAALFAVD
CCCCHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SIKKDDHEALLQLTNNLAKENLVFDATIYDAEGGVLSKSSNALTASQITGINTPLSIDGI
HCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCEEECCCCCEEHHHHCCCCCCEEECCC
GRQQLIEPIVKDDRVLGFLRITFEKSTLTGFANHHYRKSDRLMFGMLIISLVSGMFIMAI
CHHHHHHHHHCCCCEEEEEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
LKKREDSSKPVTTLFGGKS
HHHCCCCCCCEEEECCCCC
>Mature Secondary Structure
MMLSQNLIIKSLMLLSLIAFSYFILINSTVISDNNQIIQNKQLQDLSRTMTRQAALFAVD
CCCCHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SIKKDDHEALLQLTNNLAKENLVFDATIYDAEGGVLSKSSNALTASQITGINTPLSIDGI
HCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCEEECCCCCEEHHHHCCCCCCEEECCC
GRQQLIEPIVKDDRVLGFLRITFEKSTLTGFANHHYRKSDRLMFGMLIISLVSGMFIMAI
CHHHHHHHHHCCCCEEEEEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
LKKREDSSKPVTTLFGGKS
HHHCCCCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]