Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is yjgA [C]
Identifier: 209694086
GI number: 209694086
Start: 551887
End: 552426
Strand: Reverse
Name: yjgA [C]
Synonym: VSAL_I0491
Alternate gene names: 209694086
Gene position: 552426-551887 (Counterclockwise)
Preceding gene: 209694088
Following gene: 209694061
Centisome position: 16.61
GC content: 39.07
Gene sequence:
>540_bases ATGAAGACCATGGCACGTAAAAATCAAAAAGCTCCTTGGGAAGAAGAAGAAGAGATCATCTGGGTAAGTAGAACCGAGAT GAAAAATGACATGGAAGCCATACAAAAATTAGGCGAAGAGCTTGTTGGTTTAAAACCTGCCGTTCTTGCTAAATTTCCAT TATCAGAGCTCCTACAAATAGCGATCTTTGATGCACAACGTTTTAGAAACGAAGCAAAACGTCGCCAATTACAATACATT GGCAAACTAATGCGATTAGAAGATCCTGAAGCAATTCAAGCGGCTTTAGATAAAGTGCGTAACAAGCACTCGCAAACAAC TATCGCTCTTCAGAAGTTAGAAATCCTACGTGATCGTATGATTGAAACGCCTGATGCAGTGATTGAAGATCTCATGGTGA AATACCCAGAAGCTGATCGCCAACGCTTCCGTCAACTTGCTCGCCAAGCAAAAAAAGAAAAAGAATCGAATAAGCCACCA AAGGCATACCGTGAAATTTTCCAAGTATTAAAAGATTTATATTTAGCAAAAGATCTATAA
Upstream 100 bases:
>100_bases CTGAACATATACATTTTTACTAGAATAACACTCTATGTGATAAATTTGCGCCCAATTATCTATTTATCTTGCTAAAATAG AGAGAATCACCCATTAAAGA
Downstream 100 bases:
>100_bases TTCTTCTGATATAAAGAGACAAATAAAAAAGAGCCAAGCATTATTAATGCTTGGCTCTTTTTATATATTTGGATAAACGT AAATTAGCGCACAGAGATTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 179; Mature: 179
Protein sequence:
>179_residues MKTMARKNQKAPWEEEEEIIWVSRTEMKNDMEAIQKLGEELVGLKPAVLAKFPLSELLQIAIFDAQRFRNEAKRRQLQYI GKLMRLEDPEAIQAALDKVRNKHSQTTIALQKLEILRDRMIETPDAVIEDLMVKYPEADRQRFRQLARQAKKEKESNKPP KAYREIFQVLKDLYLAKDL
Sequences:
>Translated_179_residues MKTMARKNQKAPWEEEEEIIWVSRTEMKNDMEAIQKLGEELVGLKPAVLAKFPLSELLQIAIFDAQRFRNEAKRRQLQYI GKLMRLEDPEAIQAALDKVRNKHSQTTIALQKLEILRDRMIETPDAVIEDLMVKYPEADRQRFRQLARQAKKEKESNKPP KAYREIFQVLKDLYLAKDL >Mature_179_residues MKTMARKNQKAPWEEEEEIIWVSRTEMKNDMEAIQKLGEELVGLKPAVLAKFPLSELLQIAIFDAQRFRNEAKRRQLQYI GKLMRLEDPEAIQAALDKVRNKHSQTTIALQKLEILRDRMIETPDAVIEDLMVKYPEADRQRFRQLARQAKKEKESNKPP KAYREIFQVLKDLYLAKDL
Specific function: Unknown
COG id: COG3028
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0307 family [H]
Homologues:
Organism=Escherichia coli, GI1790681, Length=153, Percent_Identity=50.3267973856209, Blast_Score=150, Evalue=6e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023153 - InterPro: IPR006839 [H]
Pfam domain/function: PF04751 DUF615 [H]
EC number: NA
Molecular weight: Translated: 21107; Mature: 21107
Theoretical pI: Translated: 9.93; Mature: 9.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTMARKNQKAPWEEEEEIIWVSRTEMKNDMEAIQKLGEELVGLKPAVLAKFPLSELLQI CCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHH AIFDAQRFRNEAKRRQLQYIGKLMRLEDPEAIQAALDKVRNKHSQTTIALQKLEILRDRM HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IETPDAVIEDLMVKYPEADRQRFRQLARQAKKEKESNKPPKAYREIFQVLKDLYLAKDL CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKTMARKNQKAPWEEEEEIIWVSRTEMKNDMEAIQKLGEELVGLKPAVLAKFPLSELLQI CCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHH AIFDAQRFRNEAKRRQLQYIGKLMRLEDPEAIQAALDKVRNKHSQTTIALQKLEILRDRM HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IETPDAVIEDLMVKYPEADRQRFRQLARQAKKEKESNKPPKAYREIFQVLKDLYLAKDL CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA