Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is bcsP31 [H]
Identifier: 209693960
GI number: 209693960
Start: 391308
End: 392282
Strand: Reverse
Name: bcsP31 [H]
Synonym: VSAL_I0356
Alternate gene names: 209693960
Gene position: 392282-391308 (Counterclockwise)
Preceding gene: 209693961
Following gene: 209693959
Centisome position: 11.8
GC content: 41.85
Gene sequence:
>975_bases ATGGCATTGAAAAACTTAATTAAAGTAAGTGCTGTTGCAGCAGCAATGCTTGGTGCTGGCATGGGAACCGCAAGCGCTCA AGAATTTATTACAATTGGTACTGGTTCTGTCACCGGTGTTTACTACCCAACGGGTGGTGCTATTTGTAAGTTAGTGAATA AAGATCGTAAAGAGCATAATGTTCGTTGTTCTGTTGAGTCCACTGGTGGTTCAATTTATAACGTAAATACTATCCGTTCT GGTGAACTTGATTTTGGTATCGTGCAATCAGATTGGCAATACCATGGCTATAACGGCACAAGTAAATTTGAAGCTCAAGG TCCTTACAAGAAACTACGTGCAATGTTCTCTCTTCATACTGAACCTTTTAACATCATTGCTCGTTCTGATTCCGGTATCA ACGACGTTTCTGATTTAGCCGGAAAACGCGTTAACATTGGTAATCCAGGCTCTGGCGACCGTGCAACAATGGGTGTTGTG ATGAATGCGATGGGCTGGACAAACGACAGCTTTAAACTTGCATCGGAACTAAAAAGCTCTGAGCTTTCACAAGCGCTTTG TGATAATAAAATTGATGCCTTCATCTACATGGTTGGTCATCCAAATGGCTCAATCAAAGAAGCGACAACATCGTGTGATG CTAAATTAGTTCCTGCTACTGGTCCTAAGATCGATAAGATTGTTGCAGATAACCCTTATTACGCTTACACAACCGTTCCT GCTAGCATGTACCGTGGAACAGAAGGCGATGTAAATAGCTTTGGTGTTGCGGCTACGGTGGTTACGACATCTGACGTATC AGATGAAGTGGCTTACAGTGTTGCAAAAGCAGTATTTGAAAACTTTAATACCTTCAAGCGTCTTCACCCTGCGTTTGCTA CGCTGAAAAAAGAAGACATGGTTAAAGCGGGTATTTCTATTCCATTGCATCCTGGTGCGGTGAAATATTACAAAGAAGTT GGTCTACTAAAATAG
Upstream 100 bases:
>100_bases CTTTGAATATGAAGTGAATAAATAATGCGTCTTACTTTCTACGATCTAATATTAAGAACGATGAACAGTAAAGAAGCAAC ATAATAAGGAAGGGAATAAC
Downstream 100 bases:
>100_bases TTCCCTTCTATACAACTCAACGTTAATTAAAAAACTGGGTTGTCTAAATCAAAGAGGCTAAATAGTCTCTTTGATTCTTC GCAACACCATCTGATCTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MALKNLIKVSAVAAAMLGAGMGTASAQEFITIGTGSVTGVYYPTGGAICKLVNKDRKEHNVRCSVESTGGSIYNVNTIRS GELDFGIVQSDWQYHGYNGTSKFEAQGPYKKLRAMFSLHTEPFNIIARSDSGINDVSDLAGKRVNIGNPGSGDRATMGVV MNAMGWTNDSFKLASELKSSELSQALCDNKIDAFIYMVGHPNGSIKEATTSCDAKLVPATGPKIDKIVADNPYYAYTTVP ASMYRGTEGDVNSFGVAATVVTTSDVSDEVAYSVAKAVFENFNTFKRLHPAFATLKKEDMVKAGISIPLHPGAVKYYKEV GLLK
Sequences:
>Translated_324_residues MALKNLIKVSAVAAAMLGAGMGTASAQEFITIGTGSVTGVYYPTGGAICKLVNKDRKEHNVRCSVESTGGSIYNVNTIRS GELDFGIVQSDWQYHGYNGTSKFEAQGPYKKLRAMFSLHTEPFNIIARSDSGINDVSDLAGKRVNIGNPGSGDRATMGVV MNAMGWTNDSFKLASELKSSELSQALCDNKIDAFIYMVGHPNGSIKEATTSCDAKLVPATGPKIDKIVADNPYYAYTTVP ASMYRGTEGDVNSFGVAATVVTTSDVSDEVAYSVAKAVFENFNTFKRLHPAFATLKKEDMVKAGISIPLHPGAVKYYKEV GLLK >Mature_323_residues ALKNLIKVSAVAAAMLGAGMGTASAQEFITIGTGSVTGVYYPTGGAICKLVNKDRKEHNVRCSVESTGGSIYNVNTIRSG ELDFGIVQSDWQYHGYNGTSKFEAQGPYKKLRAMFSLHTEPFNIIARSDSGINDVSDLAGKRVNIGNPGSGDRATMGVVM NAMGWTNDSFKLASELKSSELSQALCDNKIDAFIYMVGHPNGSIKEATTSCDAKLVPATGPKIDKIVADNPYYAYTTVPA SMYRGTEGDVNSFGVAATVVTTSDVSDEVAYSVAKAVFENFNTFKRLHPAFATLKKEDMVKAGISIPLHPGAVKYYKEVG LLK
Specific function: Unknown
COG id: COG2358
COG function: function code R; TRAP-type uncharacterized transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015168 - InterPro: IPR011852 [H]
Pfam domain/function: PF09084 NMT1 [H]
EC number: NA
Molecular weight: Translated: 34634; Mature: 34502
Theoretical pI: Translated: 8.28; Mature: 8.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALKNLIKVSAVAAAMLGAGMGTASAQEFITIGTGSVTGVYYPTGGAICKLVNKDRKEHN CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCHHHHHHHHCCCCCCC VRCSVESTGGSIYNVNTIRSGELDFGIVQSDWQYHGYNGTSKFEAQGPYKKLRAMFSLHT EEEEEECCCCEEEEEEEEECCCCCEEEEECCCEECCCCCCCCCCCCCHHHHHHHHHHHCC EPFNIIARSDSGINDVSDLAGKRVNIGNPGSGDRATMGVVMNAMGWTNDSFKLASELKSS CCEEEEEECCCCCCHHHHHCCCEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH ELSQALCDNKIDAFIYMVGHPNGSIKEATTSCDAKLVPATGPKIDKIVADNPYYAYTTVP HHHHHHHCCCCEEEEEEEECCCCCCHHHCCCCCCEEECCCCCCCCEEEECCCEEEEEECC ASMYRGTEGDVNSFGVAATVVTTSDVSDEVAYSVAKAVFENFNTFKRLHPAFATLKKEDM HHHHCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VKAGISIPLHPGAVKYYKEVGLLK HHHCCCCCCCCCHHHHHHHHCCCC >Mature Secondary Structure ALKNLIKVSAVAAAMLGAGMGTASAQEFITIGTGSVTGVYYPTGGAICKLVNKDRKEHN CHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCHHHHHHHHCCCCCCC VRCSVESTGGSIYNVNTIRSGELDFGIVQSDWQYHGYNGTSKFEAQGPYKKLRAMFSLHT EEEEEECCCCEEEEEEEEECCCCCEEEEECCCEECCCCCCCCCCCCCHHHHHHHHHHHCC EPFNIIARSDSGINDVSDLAGKRVNIGNPGSGDRATMGVVMNAMGWTNDSFKLASELKSS CCEEEEEECCCCCCHHHHHCCCEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH ELSQALCDNKIDAFIYMVGHPNGSIKEATTSCDAKLVPATGPKIDKIVADNPYYAYTTVP HHHHHHHCCCCEEEEEEEECCCCCCHHHCCCCCCEEECCCCCCCCEEEECCCEEEEEECC ASMYRGTEGDVNSFGVAATVVTTSDVSDEVAYSVAKAVFENFNTFKRLHPAFATLKKEDM HHHHCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VKAGISIPLHPGAVKYYKEVGLLK HHHCCCCCCCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3133283 [H]