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The map label for this gene is 209693910

Identifier: 209693910

GI number: 209693910

Start: 349698

End: 350714

Strand: Reverse

Name: 209693910

Synonym: VSAL_I0304

Alternate gene names: NA

Gene position: 350714-349698 (Counterclockwise)

Preceding gene: 209693922

Following gene: 209693909

Centisome position: 10.55

GC content: 40.51

Gene sequence:

>1017_bases
ATGCGCGTTATCTCTCAATACCTTGCAATATTTGTCATTACACTGACATTAGCTGGCTGTTTCTTTAATAACTCTGACGT
TCAACGTTGGGAGATGGCCCCTGAAGGAACCACCAGTTTCGCTTTAAGTAGAGACGCACGGTTTGCTTTATTCTATGTAA
AACCTCACCCCAAAGATAAAAATCCTCAATTAAATAAAAAAAGTGGCCTCCATTTTTGGGATCTCATTGAGAATAAAGAA
TTAACGTATTTTGGTGAGCAAGACCAACTTAAGTCTGTCGTCTCCCATATTAAGATTTCAGACAACTCTCGTTTTGCTAT
TACGGCAACCCAAACTAATTTTGCGGTCTGGGATTTGGGTATGGGCGTATCTGAAGGATTATGGTCCATCTCTGATGGCA
TTATCCGTGATGTCGATATTTCAAGTAATGGACAGCAAGTCCTACTTGGTTTATCTAACGGTAAAGCGATTTATATTGAT
TTAGCAACGGGGCGCCGTTTGGAGTTTTTGGCTCATAGAGAAAAAATAAACTCTGTCGCCCTATCTGCAAATGGGAAATT
TGCGCTCTCTGGAGGAAATGACCATTTTGCTTATTTTTGGGATACCACTACAGGGCAAATTATATATACTTTTGAACATG
ATAAACGAGTAAGCCGCATTGCTTTGCAGCGTGATGGGAAATTTGCATTAACTGCCGATGGTGGAAATGAAGGCTTTATT
TGGGATTTAAAAACCGGTCAAAAAATATCAACATTGAGCACTTTTTCTCGTCAGCAAGTATTTTCTACTGCCCGTTTTAG
TGATGATGGCAATTATCTTGTTACCGGTTCCCCTGCTGGTACGATAAAATTATGGAATATACCCTCAGGTAAGAAACAAG
AACAATGGCGAGCTGAACCACTAAAAGATGCACGCCCACCAACAGCCGTAGTGTATGATGTCGCTATTGATAAAAAACAA
CGAGTCATTTCAGCCACCTCAGCCGGAATAGCTCAAGCGTGGTTGATAGAAGAATGA

Upstream 100 bases:

>100_bases
CCTCATTTTCTTATTCAATTATTTAGATAAAGATGCGAAATAGTGCTCATCACAATATACTAGTACTTATAGACACATTA
CAAACGAGTAGTTCAATTTG

Downstream 100 bases:

>100_bases
CAACAGACATAAAACAACTAGAACTAAAAATCAGTGATTTAGAATGCCAAATGGCGTTCCAAGAACAAACAATTGATGAA
TTAAACGATGCGTTATCACA

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MRVISQYLAIFVITLTLAGCFFNNSDVQRWEMAPEGTTSFALSRDARFALFYVKPHPKDKNPQLNKKSGLHFWDLIENKE
LTYFGEQDQLKSVVSHIKISDNSRFAITATQTNFAVWDLGMGVSEGLWSISDGIIRDVDISSNGQQVLLGLSNGKAIYID
LATGRRLEFLAHREKINSVALSANGKFALSGGNDHFAYFWDTTTGQIIYTFEHDKRVSRIALQRDGKFALTADGGNEGFI
WDLKTGQKISTLSTFSRQQVFSTARFSDDGNYLVTGSPAGTIKLWNIPSGKKQEQWRAEPLKDARPPTAVVYDVAIDKKQ
RVISATSAGIAQAWLIEE

Sequences:

>Translated_338_residues
MRVISQYLAIFVITLTLAGCFFNNSDVQRWEMAPEGTTSFALSRDARFALFYVKPHPKDKNPQLNKKSGLHFWDLIENKE
LTYFGEQDQLKSVVSHIKISDNSRFAITATQTNFAVWDLGMGVSEGLWSISDGIIRDVDISSNGQQVLLGLSNGKAIYID
LATGRRLEFLAHREKINSVALSANGKFALSGGNDHFAYFWDTTTGQIIYTFEHDKRVSRIALQRDGKFALTADGGNEGFI
WDLKTGQKISTLSTFSRQQVFSTARFSDDGNYLVTGSPAGTIKLWNIPSGKKQEQWRAEPLKDARPPTAVVYDVAIDKKQ
RVISATSAGIAQAWLIEE
>Mature_338_residues
MRVISQYLAIFVITLTLAGCFFNNSDVQRWEMAPEGTTSFALSRDARFALFYVKPHPKDKNPQLNKKSGLHFWDLIENKE
LTYFGEQDQLKSVVSHIKISDNSRFAITATQTNFAVWDLGMGVSEGLWSISDGIIRDVDISSNGQQVLLGLSNGKAIYID
LATGRRLEFLAHREKINSVALSANGKFALSGGNDHFAYFWDTTTGQIIYTFEHDKRVSRIALQRDGKFALTADGGNEGFI
WDLKTGQKISTLSTFSRQQVFSTARFSDDGNYLVTGSPAGTIKLWNIPSGKKQEQWRAEPLKDARPPTAVVYDVAIDKKQ
RVISATSAGIAQAWLIEE

Specific function: Unknown

COG id: COG2319

COG function: function code R; FOG: WD40 repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 13 WD repeats [H]

Homologues:

Organism=Homo sapiens, GI23199987, Length=212, Percent_Identity=23.5849056603774, Blast_Score=65, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17552164, Length=185, Percent_Identity=26.4864864864865, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6319675, Length=135, Percent_Identity=28.1481481481481, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6325435, Length=133, Percent_Identity=30.0751879699248, Blast_Score=63, Evalue=7e-11,
Organism=Drosophila melanogaster, GI17864654, Length=201, Percent_Identity=24.3781094527363, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020472
- InterPro:   IPR011600
- InterPro:   IPR015943
- InterPro:   IPR001680
- InterPro:   IPR011046
- InterPro:   IPR019782
- InterPro:   IPR019775
- InterPro:   IPR017986
- InterPro:   IPR019781 [H]

Pfam domain/function: PF00656 Peptidase_C14; PF00400 WD40 [H]

EC number: NA

Molecular weight: Translated: 37702; Mature: 37702

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00678 WD_REPEATS_1 ; PS50082 WD_REPEATS_2 ; PS50294 WD_REPEATS_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVISQYLAIFVITLTLAGCFFNNSDVQRWEMAPEGTTSFALSRDARFALFYVKPHPKDK
CHHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCCCEEEEECCCEEEEEEECCCCCCC
NPQLNKKSGLHFWDLIENKELTYFGEQDQLKSVVSHIKISDNSRFAITATQTNFAVWDLG
CCCCCCCCCCEEEEEECCCEEEEECCHHHHHHHHHEEEECCCCEEEEEEECCCEEEEEEC
MGVSEGLWSISDGIIRDVDISSNGQQVLLGLSNGKAIYIDLATGRRLEFLAHREKINSVA
CCCCCCCHHCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEHHHHHHHHHCEEE
LSANGKFALSGGNDHFAYFWDTTTGQIIYTFEHDKRVSRIALQRDGKFALTADGGNEGFI
EECCCEEEEECCCCEEEEEEECCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCCCEE
WDLKTGQKISTLSTFSRQQVFSTARFSDDGNYLVTGSPAGTIKLWNIPSGKKQEQWRAEP
EECCCCCEEHHHHHHHHHHHHHHHEECCCCCEEEECCCCCEEEEEECCCCCCCHHHCCCC
LKDARPPTAVVYDVAIDKKQRVISATSAGIAQAWLIEE
CCCCCCCEEEEEEEEECCCHHEEECCCCCCEEEEEECC
>Mature Secondary Structure
MRVISQYLAIFVITLTLAGCFFNNSDVQRWEMAPEGTTSFALSRDARFALFYVKPHPKDK
CHHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCCCEEEEECCCEEEEEEECCCCCCC
NPQLNKKSGLHFWDLIENKELTYFGEQDQLKSVVSHIKISDNSRFAITATQTNFAVWDLG
CCCCCCCCCCEEEEEECCCEEEEECCHHHHHHHHHEEEECCCCEEEEEEECCCEEEEEEC
MGVSEGLWSISDGIIRDVDISSNGQQVLLGLSNGKAIYIDLATGRRLEFLAHREKINSVA
CCCCCCCHHCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEHHHHHHHHHCEEE
LSANGKFALSGGNDHFAYFWDTTTGQIIYTFEHDKRVSRIALQRDGKFALTADGGNEGFI
EECCCEEEEECCCCEEEEEEECCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCCCEE
WDLKTGQKISTLSTFSRQQVFSTARFSDDGNYLVTGSPAGTIKLWNIPSGKKQEQWRAEP
EECCCCCEEHHHHHHHHHHHHHHHEECCCCCEEEECCCCCEEEEEECCCCCCCHHHCCCC
LKDARPPTAVVYDVAIDKKQRVISATSAGIAQAWLIEE
CCCCCCCEEEEEEEEECCCHHEEECCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]