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The map label for this gene is ycjD [C]

Identifier: 209693889

GI number: 209693889

Start: 331420

End: 331788

Strand: Reverse

Name: ycjD [C]

Synonym: VSAL_I0282

Alternate gene names: 209693889

Gene position: 331788-331420 (Counterclockwise)

Preceding gene: 209693890

Following gene: 209693883

Centisome position: 9.98

GC content: 32.52

Gene sequence:

>369_bases
ATGACGCTTATTTATAATAAATCAAAACACAAAACACTCAGGCAAAAGCTTAGATCTGAAGTTCCAACAGCAGAACGTGT
ATTATGGAATAAACTTCGACGAAATCAGCTCAATGTTAAATTTCGACGCCAATATGGTATTGGCCGGTATGTTTGTGATT
TTTATAATGCTGAATATAAATTAGTCATTGAACTTGATGGTGATAGTCACTTTACTCCTGAAGCTGAAAACTATGATGCT
ATACGAAATGAATACATGCGTAATCTTGGAATGTCGGTACTGCGCTTCACAAACCAAGATATCATGAACAATATTAATGG
TGTTATCGAATTTATTTTAATACATATAGATCAATTAAAATCCGAATAA

Upstream 100 bases:

>100_bases
ACTAATTTTGAACTCCATCGAAATTCTTTACTAACCACTATCCTTTGTCATCAGTAGCTTCTATGGTTTATCGTGTTTAC
CGATATAAGCCTAAATTCTA

Downstream 100 bases:

>100_bases
TACCTACCATCATCACAATAACCCCTCCCTAGACCTCCCCTTAGTAAAGGGAGGGAACTGTATTGTATTCGCTGAAATTA
CAACAACTACAATCGGCTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MTLIYNKSKHKTLRQKLRSEVPTAERVLWNKLRRNQLNVKFRRQYGIGRYVCDFYNAEYKLVIELDGDSHFTPEAENYDA
IRNEYMRNLGMSVLRFTNQDIMNNINGVIEFILIHIDQLKSE

Sequences:

>Translated_122_residues
MTLIYNKSKHKTLRQKLRSEVPTAERVLWNKLRRNQLNVKFRRQYGIGRYVCDFYNAEYKLVIELDGDSHFTPEAENYDA
IRNEYMRNLGMSVLRFTNQDIMNNINGVIEFILIHIDQLKSE
>Mature_121_residues
TLIYNKSKHKTLRQKLRSEVPTAERVLWNKLRRNQLNVKFRRQYGIGRYVCDFYNAEYKLVIELDGDSHFTPEAENYDAI
RNEYMRNLGMSVLRFTNQDIMNNINGVIEFILIHIDQLKSE

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ycjD and H.influenzae HI_1162 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=111, Percent_Identity=36.9369369369369, Blast_Score=67, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 14616; Mature: 14485

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLIYNKSKHKTLRQKLRSEVPTAERVLWNKLRRNQLNVKFRRQYGIGRYVCDFYNAEYK
CCEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEHHHCCCHHHHHHHCCCCEE
LVIELDGDSHFTPEAENYDAIRNEYMRNLGMSVLRFTNQDIMNNINGVIEFILIHIDQLK
EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC
SE
CC
>Mature Secondary Structure 
TLIYNKSKHKTLRQKLRSEVPTAERVLWNKLRRNQLNVKFRRQYGIGRYVCDFYNAEYK
CEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEHHHCCCHHHHHHHCCCCEE
LVIELDGDSHFTPEAENYDAIRNEYMRNLGMSVLRFTNQDIMNNINGVIEFILIHIDQLK
EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC
SE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]