| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209693822
Identifier: 209693822
GI number: 209693822
Start: 250359
End: 250787
Strand: Reverse
Name: 209693822
Synonym: VSAL_I0209
Alternate gene names: NA
Gene position: 250787-250359 (Counterclockwise)
Preceding gene: 209693826
Following gene: 209693820
Centisome position: 7.54
GC content: 41.03
Gene sequence:
>429_bases ATGCCGTCACATCTACCTAAATCATTCAGTAAACCGTTTTTAAAAATATTTCATATTTTAGAAGCGGTGTTATTAGTTGC CATCACGCTTGCGACTGTCTTTGCGATGGTGAACGAGTTTGTACACGTATTTTCTGAGCGACAGATCCAGTTAACAGACA TTCTGTTGATGTTCATTTATCTCGAAGTGTTGGCCATGGTGCAACAATTTGTGATGAACGGTAAAATCCCTGTTCGCTAT CCTATCTATATTGCGATGATGGCCATTGCTCGTTACATCACTCTAGGCATGAAAGAACTCGATGCGGTCTTGGTTGTGTG GCTCGCGTTAGCTGCTTTTATTTTAGCAGCAGCAACCTTATTGATCCGAGCTGGGCATTATTATTGGCCGTATGAAACAC ATGAGAGCAGTAAGAAATATGATGAGTAA
Upstream 100 bases:
>100_bases AATGAATCAATGAAATACGTAAATTAACGAATAATTTGAAAGAATTAATGCTACGCTTTAGGATTAGGATCCAATTAGAA TAAAAAAAGAGTAATTTTAA
Downstream 100 bases:
>100_bases TAACTAACGTATAGCAGAAAAATAAAAAGCCTCGCAGATAGTTATCAACGAGGCCTTTTTAATGGTTAACAATCAAAACT GATTATTCAATGTTCTGAAT
Product: phosphate-starvation-inducible E
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 142; Mature: 141
Protein sequence:
>142_residues MPSHLPKSFSKPFLKIFHILEAVLLVAITLATVFAMVNEFVHVFSERQIQLTDILLMFIYLEVLAMVQQFVMNGKIPVRY PIYIAMMAIARYITLGMKELDAVLVVWLALAAFILAAATLLIRAGHYYWPYETHESSKKYDE
Sequences:
>Translated_142_residues MPSHLPKSFSKPFLKIFHILEAVLLVAITLATVFAMVNEFVHVFSERQIQLTDILLMFIYLEVLAMVQQFVMNGKIPVRY PIYIAMMAIARYITLGMKELDAVLVVWLALAAFILAAATLLIRAGHYYWPYETHESSKKYDE >Mature_141_residues PSHLPKSFSKPFLKIFHILEAVLLVAITLATVFAMVNEFVHVFSERQIQLTDILLMFIYLEVLAMVQQFVMNGKIPVRYP IYIAMMAIARYITLGMKELDAVLVVWLALAAFILAAATLLIRAGHYYWPYETHESSKKYDE
Specific function: Unknown
COG id: COG3223
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16327; Mature: 16196
Theoretical pI: Translated: 7.87; Mature: 7.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.6 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSHLPKSFSKPFLKIFHILEAVLLVAITLATVFAMVNEFVHVFSERQIQLTDILLMFIY CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LEVLAMVQQFVMNGKIPVRYPIYIAMMAIARYITLGMKELDAVLVVWLALAAFILAAATL HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIRAGHYYWPYETHESSKKYDE HHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PSHLPKSFSKPFLKIFHILEAVLLVAITLATVFAMVNEFVHVFSERQIQLTDILLMFIY CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LEVLAMVQQFVMNGKIPVRYPIYIAMMAIARYITLGMKELDAVLVVWLALAAFILAAATL HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIRAGHYYWPYETHESSKKYDE HHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA