| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is epsM [H]
Identifier: 209693785
GI number: 209693785
Start: 208430
End: 209074
Strand: Reverse
Name: epsM [H]
Synonym: VSAL_I0168
Alternate gene names: 209693785
Gene position: 209074-208430 (Counterclockwise)
Preceding gene: 209693786
Following gene: 209693784
Centisome position: 6.29
GC content: 39.38
Gene sequence:
>645_bases TTGAGTAAGACAGAGTTAAAGCCTCTGGTTGTGATTGGTGGAGGAGGTCACGCAAGTGTCTTAGTTGATATCCTTCGTTC ACAACAGCGTGAAATTCTTGCTATTGTTAGCCCAGAGGATATTAGTCAGCGTCGTGTTTTCTCTGGCTTAACACATCTTA AAAATGATGACGATGTACTTGGTTTTTCACCAGACTCAGTATACTTGGTTAATGGCGTAGGCATGCTCCCTAAGTCAGGG TTAAAGCGTAAACTAAATGAGTATTTTATATCTCTTGGATATTCATTTGAAACCGTGATTTCTGATAGCGCTCAAGTATC CTCATTTGCTGAGATAGAGCAAGGTGCTCAAATTTTTTCAGGGGCTATCATTCAAGCGGGTGTAGTGATTGGTGCTCACA GTATTATTAATAGTGGTGTAATTATTGAGCATGACTGCATGATTGGTCAGTATAACCATATTGCGCCTAAAGCAATATTA TGTGGTCAAGTGACGACACATCAATATGTATATATTGGAGCAAACGCAACTGTGATTCAAAACATTACGCTTGAACAAAG TTCGATTGTTGGTGCGGGTGCTATAGTGACTAAAAATATATCTTCTGAACAAATCTGCTACCCAAGCCGTTCGGTATTGA AATAA
Upstream 100 bases:
>100_bases CTTACAATTAAACGCCCAGGATCAGGCATGTCGCCATACCACTACTGGGCTCTATTGAATCAACCTGCAAGCCAAGATTA TAAAGCAGGAGATTTAATTG
Downstream 100 bases:
>100_bases GTAATAAGGTAAGTCATGAGTTATTCTTGGAAAAAAGTATTAATTAAACCGGAATCCACCATTGTTGATGCGCTTAGAGT TATTGATAATGAATCATTGA
Product: acetyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 214; Mature: 213
Protein sequence:
>214_residues MSKTELKPLVVIGGGGHASVLVDILRSQQREILAIVSPEDISQRRVFSGLTHLKNDDDVLGFSPDSVYLVNGVGMLPKSG LKRKLNEYFISLGYSFETVISDSAQVSSFAEIEQGAQIFSGAIIQAGVVIGAHSIINSGVIIEHDCMIGQYNHIAPKAIL CGQVTTHQYVYIGANATVIQNITLEQSSIVGAGAIVTKNISSEQICYPSRSVLK
Sequences:
>Translated_214_residues MSKTELKPLVVIGGGGHASVLVDILRSQQREILAIVSPEDISQRRVFSGLTHLKNDDDVLGFSPDSVYLVNGVGMLPKSG LKRKLNEYFISLGYSFETVISDSAQVSSFAEIEQGAQIFSGAIIQAGVVIGAHSIINSGVIIEHDCMIGQYNHIAPKAIL CGQVTTHQYVYIGANATVIQNITLEQSSIVGAGAIVTKNISSEQICYPSRSVLK >Mature_213_residues SKTELKPLVVIGGGGHASVLVDILRSQQREILAIVSPEDISQRRVFSGLTHLKNDDDVLGFSPDSVYLVNGVGMLPKSGL KRKLNEYFISLGYSFETVISDSAQVSSFAEIEQGAQIFSGAIIQAGVVIGAHSIINSGVIIEHDCMIGQYNHIAPKAILC GQVTTHQYVYIGANATVIQNITLEQSSIVGAGAIVTKNISSEQICYPSRSVLK
Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles [H]
COG id: COG0110
COG function: function code R; Acetyltransferase (isoleucine patch superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transferase hexapeptide repeat family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018357 - InterPro: IPR013817 - InterPro: IPR020019 - InterPro: IPR011004 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22903; Mature: 22771
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00101 HEXAPEP_TRANSFERASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKTELKPLVVIGGGGHASVLVDILRSQQREILAIVSPEDISQRRVFSGLTHLKNDDDVL CCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEE GFSPDSVYLVNGVGMLPKSGLKRKLNEYFISLGYSFETVISDSAQVSSFAEIEQGAQIFS EECCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEHHHCCCHHHHHHHHHHHHHHHHH GAIIQAGVVIGAHSIINSGVIIEHDCMIGQYNHIAPKAILCGQVTTHQYVYIGANATVIQ CHHHHHHHHEEHHHHHCCCEEEEECCEECCCCCCCCCEEEECCCCCCEEEEECCCCEEEE NITLEQSSIVGAGAIVTKNISSEQICYPSRSVLK EEEECCCCCCCCCEEEEECCCCCEEECCCHHHCC >Mature Secondary Structure SKTELKPLVVIGGGGHASVLVDILRSQQREILAIVSPEDISQRRVFSGLTHLKNDDDVL CCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEE GFSPDSVYLVNGVGMLPKSGLKRKLNEYFISLGYSFETVISDSAQVSSFAEIEQGAQIFS EECCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEHHHCCCHHHHHHHHHHHHHHHHH GAIIQAGVVIGAHSIINSGVIIEHDCMIGQYNHIAPKAILCGQVTTHQYVYIGANATVIQ CHHHHHHHHEEHHHHHCCCEEEEECCEECCCCCCCCCEEEECCCCCCEEEEECCCCEEEE NITLEQSSIVGAGAIVTKNISSEQICYPSRSVLK EEEECCCCCCCCCEEEEECCCCCEEECCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969506; 9384377 [H]