Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is epsM [H]

Identifier: 209693785

GI number: 209693785

Start: 208430

End: 209074

Strand: Reverse

Name: epsM [H]

Synonym: VSAL_I0168

Alternate gene names: 209693785

Gene position: 209074-208430 (Counterclockwise)

Preceding gene: 209693786

Following gene: 209693784

Centisome position: 6.29

GC content: 39.38

Gene sequence:

>645_bases
TTGAGTAAGACAGAGTTAAAGCCTCTGGTTGTGATTGGTGGAGGAGGTCACGCAAGTGTCTTAGTTGATATCCTTCGTTC
ACAACAGCGTGAAATTCTTGCTATTGTTAGCCCAGAGGATATTAGTCAGCGTCGTGTTTTCTCTGGCTTAACACATCTTA
AAAATGATGACGATGTACTTGGTTTTTCACCAGACTCAGTATACTTGGTTAATGGCGTAGGCATGCTCCCTAAGTCAGGG
TTAAAGCGTAAACTAAATGAGTATTTTATATCTCTTGGATATTCATTTGAAACCGTGATTTCTGATAGCGCTCAAGTATC
CTCATTTGCTGAGATAGAGCAAGGTGCTCAAATTTTTTCAGGGGCTATCATTCAAGCGGGTGTAGTGATTGGTGCTCACA
GTATTATTAATAGTGGTGTAATTATTGAGCATGACTGCATGATTGGTCAGTATAACCATATTGCGCCTAAAGCAATATTA
TGTGGTCAAGTGACGACACATCAATATGTATATATTGGAGCAAACGCAACTGTGATTCAAAACATTACGCTTGAACAAAG
TTCGATTGTTGGTGCGGGTGCTATAGTGACTAAAAATATATCTTCTGAACAAATCTGCTACCCAAGCCGTTCGGTATTGA
AATAA

Upstream 100 bases:

>100_bases
CTTACAATTAAACGCCCAGGATCAGGCATGTCGCCATACCACTACTGGGCTCTATTGAATCAACCTGCAAGCCAAGATTA
TAAAGCAGGAGATTTAATTG

Downstream 100 bases:

>100_bases
GTAATAAGGTAAGTCATGAGTTATTCTTGGAAAAAAGTATTAATTAAACCGGAATCCACCATTGTTGATGCGCTTAGAGT
TATTGATAATGAATCATTGA

Product: acetyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MSKTELKPLVVIGGGGHASVLVDILRSQQREILAIVSPEDISQRRVFSGLTHLKNDDDVLGFSPDSVYLVNGVGMLPKSG
LKRKLNEYFISLGYSFETVISDSAQVSSFAEIEQGAQIFSGAIIQAGVVIGAHSIINSGVIIEHDCMIGQYNHIAPKAIL
CGQVTTHQYVYIGANATVIQNITLEQSSIVGAGAIVTKNISSEQICYPSRSVLK

Sequences:

>Translated_214_residues
MSKTELKPLVVIGGGGHASVLVDILRSQQREILAIVSPEDISQRRVFSGLTHLKNDDDVLGFSPDSVYLVNGVGMLPKSG
LKRKLNEYFISLGYSFETVISDSAQVSSFAEIEQGAQIFSGAIIQAGVVIGAHSIINSGVIIEHDCMIGQYNHIAPKAIL
CGQVTTHQYVYIGANATVIQNITLEQSSIVGAGAIVTKNISSEQICYPSRSVLK
>Mature_213_residues
SKTELKPLVVIGGGGHASVLVDILRSQQREILAIVSPEDISQRRVFSGLTHLKNDDDVLGFSPDSVYLVNGVGMLPKSGL
KRKLNEYFISLGYSFETVISDSAQVSSFAEIEQGAQIFSGAIIQAGVVIGAHSIINSGVIIEHDCMIGQYNHIAPKAILC
GQVTTHQYVYIGANATVIQNITLEQSSIVGAGAIVTKNISSEQICYPSRSVLK

Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles [H]

COG id: COG0110

COG function: function code R; Acetyltransferase (isoleucine patch superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018357
- InterPro:   IPR013817
- InterPro:   IPR020019
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22903; Mature: 22771

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00101 HEXAPEP_TRANSFERASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTELKPLVVIGGGGHASVLVDILRSQQREILAIVSPEDISQRRVFSGLTHLKNDDDVL
CCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEE
GFSPDSVYLVNGVGMLPKSGLKRKLNEYFISLGYSFETVISDSAQVSSFAEIEQGAQIFS
EECCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEHHHCCCHHHHHHHHHHHHHHHHH
GAIIQAGVVIGAHSIINSGVIIEHDCMIGQYNHIAPKAILCGQVTTHQYVYIGANATVIQ
CHHHHHHHHEEHHHHHCCCEEEEECCEECCCCCCCCCEEEECCCCCCEEEEECCCCEEEE
NITLEQSSIVGAGAIVTKNISSEQICYPSRSVLK
EEEECCCCCCCCCEEEEECCCCCEEECCCHHHCC
>Mature Secondary Structure 
SKTELKPLVVIGGGGHASVLVDILRSQQREILAIVSPEDISQRRVFSGLTHLKNDDDVL
CCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEE
GFSPDSVYLVNGVGMLPKSGLKRKLNEYFISLGYSFETVISDSAQVSSFAEIEQGAQIFS
EECCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEHHHCCCHHHHHHHHHHHHHHHHH
GAIIQAGVVIGAHSIINSGVIIEHDCMIGQYNHIAPKAILCGQVTTHQYVYIGANATVIQ
CHHHHHHHHEEHHHHHCCCEEEEECCEECCCCCCCCCEEEECCCCCCEEEEECCCCEEEE
NITLEQSSIVGAGAIVTKNISSEQICYPSRSVLK
EEEECCCCCCCCCEEEEECCCCCEEECCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969506; 9384377 [H]