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The map label for this gene is yfgC [H]

Identifier: 209693746

GI number: 209693746

Start: 158962

End: 160401

Strand: Reverse

Name: yfgC [H]

Synonym: VSAL_I0123

Alternate gene names: 209693746

Gene position: 160401-158962 (Counterclockwise)

Preceding gene: 209693747

Following gene: 209693744

Centisome position: 4.82

GC content: 39.65

Gene sequence:

>1440_bases
ATGCCTATGAAAAGCATATCGAACATCACAAAAATCACAGGGATGACTCTGATCTCTTTATCTATCTCTGCTTGCTCAAT
AAGTCCAAACTACGATAAATCCGTCGGAGAAAAAAACTCACTCGTTATTGAGCAACAAATGGGGATATATCAAAATGAAT
CACTCGATCAATACGTCAAACAAGTGGGTGCTCGCTTAGTCTCTCATCTTGATTCACCACAGTTTGATTTTAAATTTGAA
ATTGTTGATGACCCAATCCCAAATGCGTTTGCCCTCCCTGGTGGTTATATTTATATTTCTCGGGGTTTGTTAACTCTAAT
GAACAATGAAGACGAGCTCGCCTGTGTATTGGCTCATGAAATTATTCATGTCACAGAAAGGCATTCAATTCAGCAAATGA
AGCGAAGTATTCTGCCTGGCATAACTCAATTACCCGGCAACATTGTTGGCAGCGTAATAAATGAAGACTTAGGTAATCTA
ATTAATACCCCGTTTACCTTTAGCAACGATTTATTAATGGCAAACTACAGTCGTTCTCATGAAACAGAATCAGATGAACT
TGGTGTAAATTTAGCGGCAAAATCTGGCTATAATCCCATGGCGATGGGCGTTATTTTAGCTCGTATAAATGATGCGATTG
AATTTAAAACGCAGACGGAAACTGAAAAAAGCTACTTTGATAGCCACCCTTACACACCAGAACGTGTTAAGCATGTCGAT
CTATCAGCAAGTGCATTAAGAGTGATACCTCAAAAACCAATTAAGCCTAATTTTCTCTATAACCTCAATGAGTTAGTCGT
CGGTGACAATCCAGAAAATGGCGTTTTTTCTGAATCGACATTCATTCAGCCTACGATGGGCTTTACCATAATATTCCCTA
AAGAGTGGCAAACAGTAAACCAACCTCAAGTTGTTGCGGCGATCAATGAGACACACGATGGCTTTGTCGCTCTCTCCGTT
TCCGATCCTCAATACACTGCTGAGCAAACAGCGCATCGCTTTAGTCAGTACCTTGAACTTAAATATCATTACTTAGCGCC
AGTAAATACGGTTGAGTTAACATGGGGAGCAACCATGTATAACGTGCAATTAACGGATAAAGAAGGAAAACAAGACACGT
TTATCACCCAATATTGGCTCGATTTGAACGACATCACTTATCAAGTACTCACCCTAAGTACCGCGAAAAACAAAAGTGAA
GTCAGCATTTCAGCCCTCTCTTTACAACCAATCACAGATGCACAAATTGCAGCAATAACTCAAAAAGAGATCGCGATTAC
TACGGTAATAAAAGGCGAAAGTGTCAATGAGCTAACCAAGCGTAATCATTCTGATTTATCGGCAGAAGAGACAGCGATAT
GGAATGGATTAGAAGAAAATACGCCACTACACCAAGGTGATGAGGTAAAAATAGTCGTGACTAAGCCCTATAAGAAATAA

Upstream 100 bases:

>100_bases
TAAGCTCTTTTGATCTACTCGGAAGGGCTTAATTTATTATTTTTCCCCACCCCAACTCTGTCACCTTCGAATACAAGTTA
ACTCAACATAAGGCCAAGGA

Downstream 100 bases:

>100_bases
ACGCTTTAAAACAAAAAACGCCTCAATATAATGATTGAGGCGTTTTATTTATGGCACTTACTTGCTTAGTTTATTACGCA
CCAATGCCCGCATGACGTAA

Product: peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 479; Mature: 478

Protein sequence:

>479_residues
MPMKSISNITKITGMTLISLSISACSISPNYDKSVGEKNSLVIEQQMGIYQNESLDQYVKQVGARLVSHLDSPQFDFKFE
IVDDPIPNAFALPGGYIYISRGLLTLMNNEDELACVLAHEIIHVTERHSIQQMKRSILPGITQLPGNIVGSVINEDLGNL
INTPFTFSNDLLMANYSRSHETESDELGVNLAAKSGYNPMAMGVILARINDAIEFKTQTETEKSYFDSHPYTPERVKHVD
LSASALRVIPQKPIKPNFLYNLNELVVGDNPENGVFSESTFIQPTMGFTIIFPKEWQTVNQPQVVAAINETHDGFVALSV
SDPQYTAEQTAHRFSQYLELKYHYLAPVNTVELTWGATMYNVQLTDKEGKQDTFITQYWLDLNDITYQVLTLSTAKNKSE
VSISALSLQPITDAQIAAITQKEIAITTVIKGESVNELTKRNHSDLSAEETAIWNGLEENTPLHQGDEVKIVVTKPYKK

Sequences:

>Translated_479_residues
MPMKSISNITKITGMTLISLSISACSISPNYDKSVGEKNSLVIEQQMGIYQNESLDQYVKQVGARLVSHLDSPQFDFKFE
IVDDPIPNAFALPGGYIYISRGLLTLMNNEDELACVLAHEIIHVTERHSIQQMKRSILPGITQLPGNIVGSVINEDLGNL
INTPFTFSNDLLMANYSRSHETESDELGVNLAAKSGYNPMAMGVILARINDAIEFKTQTETEKSYFDSHPYTPERVKHVD
LSASALRVIPQKPIKPNFLYNLNELVVGDNPENGVFSESTFIQPTMGFTIIFPKEWQTVNQPQVVAAINETHDGFVALSV
SDPQYTAEQTAHRFSQYLELKYHYLAPVNTVELTWGATMYNVQLTDKEGKQDTFITQYWLDLNDITYQVLTLSTAKNKSE
VSISALSLQPITDAQIAAITQKEIAITTVIKGESVNELTKRNHSDLSAEETAIWNGLEENTPLHQGDEVKIVVTKPYKK
>Mature_478_residues
PMKSISNITKITGMTLISLSISACSISPNYDKSVGEKNSLVIEQQMGIYQNESLDQYVKQVGARLVSHLDSPQFDFKFEI
VDDPIPNAFALPGGYIYISRGLLTLMNNEDELACVLAHEIIHVTERHSIQQMKRSILPGITQLPGNIVGSVINEDLGNLI
NTPFTFSNDLLMANYSRSHETESDELGVNLAAKSGYNPMAMGVILARINDAIEFKTQTETEKSYFDSHPYTPERVKHVDL
SASALRVIPQKPIKPNFLYNLNELVVGDNPENGVFSESTFIQPTMGFTIIFPKEWQTVNQPQVVAAINETHDGFVALSVS
DPQYTAEQTAHRFSQYLELKYHYLAPVNTVELTWGATMYNVQLTDKEGKQDTFITQYWLDLNDITYQVLTLSTAKNKSEV
SISALSLQPITDAQIAAITQKEIAITTVIKGESVNELTKRNHSDLSAEETAIWNGLEENTPLHQGDEVKIVVTKPYKK

Specific function: Unknown

COG id: COG4784

COG function: function code R; Putative Zn-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=256, Percent_Identity=26.953125, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI87082185, Length=156, Percent_Identity=27.5641025641026, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87081800, Length=188, Percent_Identity=25.531914893617, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322940, Length=166, Percent_Identity=26.5060240963855, Blast_Score=67, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 53455; Mature: 53324

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMKSISNITKITGMTLISLSISACSISPNYDKSVGEKNSLVIEQQMGIYQNESLDQYVK
CCCHHHHHHHHHHCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEHHCCCCCCCCHHHHHH
QVGARLVSHLDSPQFDFKFEIVDDPIPNAFALPGGYIYISRGLLTLMNNEDELACVLAHE
HHHHHHHHHCCCCCCEEEEEEECCCCCCCEECCCCEEEEECCEEEEECCCCCEEHHHHHH
IIHVTERHSIQQMKRSILPGITQLPGNIVGSVINEDLGNLINTPFTFSNDLLMANYSRSH
HHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHCCCCEECCCEEEEECCCCC
ETESDELGVNLAAKSGYNPMAMGVILARINDAIEFKTQTETEKSYFDSHPYTPERVKHVD
CCCCHHCCEEEEECCCCCHHHHHHHHHHHHHHEEEEECCCHHHHHCCCCCCCHHHHEEEC
LSASALRVIPQKPIKPNFLYNLNELVVGDNPENGVFSESTFIQPTMGFTIIFPKEWQTVN
CCHHHHHHCCCCCCCCCEEEECCEEEECCCCCCCCCCCCCEECCCCCEEEEECCCCCCCC
QPQVVAAINETHDGFVALSVSDPQYTAEQTAHRFSQYLELKYHYLAPVNTVELTWGATMY
CCEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHEEEEEECCCCEEEEEECEEEE
NVQLTDKEGKQDTFITQYWLDLNDITYQVLTLSTAKNKSEVSISALSLQPITDAQIAAIT
EEEEECCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCCEEEEEEEECCCCCCCEEEEE
QKEIAITTVIKGESVNELTKRNHSDLSAEETAIWNGLEENTPLHQGDEVKIVVTKPYKK
CCCEEEEEEECCCCHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
>Mature Secondary Structure 
PMKSISNITKITGMTLISLSISACSISPNYDKSVGEKNSLVIEQQMGIYQNESLDQYVK
CCHHHHHHHHHHCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEHHCCCCCCCCHHHHHH
QVGARLVSHLDSPQFDFKFEIVDDPIPNAFALPGGYIYISRGLLTLMNNEDELACVLAHE
HHHHHHHHHCCCCCCEEEEEEECCCCCCCEECCCCEEEEECCEEEEECCCCCEEHHHHHH
IIHVTERHSIQQMKRSILPGITQLPGNIVGSVINEDLGNLINTPFTFSNDLLMANYSRSH
HHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHCCCCEECCCEEEEECCCCC
ETESDELGVNLAAKSGYNPMAMGVILARINDAIEFKTQTETEKSYFDSHPYTPERVKHVD
CCCCHHCCEEEEECCCCCHHHHHHHHHHHHHHEEEEECCCHHHHHCCCCCCCHHHHEEEC
LSASALRVIPQKPIKPNFLYNLNELVVGDNPENGVFSESTFIQPTMGFTIIFPKEWQTVN
CCHHHHHHCCCCCCCCCEEEECCEEEECCCCCCCCCCCCCEECCCCCEEEEECCCCCCCC
QPQVVAAINETHDGFVALSVSDPQYTAEQTAHRFSQYLELKYHYLAPVNTVELTWGATMY
CCEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHEEEEEECCCCEEEEEECEEEE
NVQLTDKEGKQDTFITQYWLDLNDITYQVLTLSTAKNKSEVSISALSLQPITDAQIAAIT
EEEEECCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCCEEEEEEEECCCCCCCEEEEE
QKEIAITTVIKGESVNELTKRNHSDLSAEETAIWNGLEENTPLHQGDEVKIVVTKPYKK
CCCEEEEEEECCCCHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]