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The map label for this gene is 209693717

Identifier: 209693717

GI number: 209693717

Start: 124833

End: 125240

Strand: Reverse

Name: 209693717

Synonym: VSAL_I0093

Alternate gene names: NA

Gene position: 125240-124833 (Counterclockwise)

Preceding gene: 209693722

Following gene: 209693715

Centisome position: 3.77

GC content: 43.63

Gene sequence:

>408_bases
ATGGATAAATCAATTCGTAACACCATCGTCGCAATAGTTGCTGCATTAACTTTTTCAACAGCCTCTTTTGCTGCAAACAA
TGCTGACGATGCAATTGCTGAGCGAATTAAACCAGTAGGCCAAGTCTATTTGGCAAGTGATGTACCCGTTGTTGAAGAAC
CAACCGGTCCTCGTACGGGTGATCAGGTATACAACACCTTTTGTATTGCATGTCACTCAACTGGCGCAGCTGGCGCACCA
AAAACTCAAAATGCAGCAGATTGGGCTCCTCGTATCGCAAAAGGTATGGATGTTCTAAAAGATCATGCGATTAACGGTTT
TAATGCAATGCCAGCACGTGGAACCTGTATGAATTGTTCTGATGATGAGCTGGTTGCTGCAATCGACCATTTAATCAAAG
GACTGTAA

Upstream 100 bases:

>100_bases
TAACGCGGCGATTTTTTCTTATGCTGCTAATTACTTAGTAAATGAAATAAAAAGATGGCGCTAAGCCAATAATAATAACT
GGGAGTGTAAAGTGAGCTTA

Downstream 100 bases:

>100_bases
GATACCGCAGATTAGGTACCGCTTATTTAACTGGTACAAAAATGCCCACAATACCAAATCAGGTATGTGGGCATTTTTAT
TTATTCTTTAAATTAAGAGG

Product: cytochrome c

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MDKSIRNTIVAIVAALTFSTASFAANNADDAIAERIKPVGQVYLASDVPVVEEPTGPRTGDQVYNTFCIACHSTGAAGAP
KTQNAADWAPRIAKGMDVLKDHAINGFNAMPARGTCMNCSDDELVAAIDHLIKGL

Sequences:

>Translated_135_residues
MDKSIRNTIVAIVAALTFSTASFAANNADDAIAERIKPVGQVYLASDVPVVEEPTGPRTGDQVYNTFCIACHSTGAAGAP
KTQNAADWAPRIAKGMDVLKDHAINGFNAMPARGTCMNCSDDELVAAIDHLIKGL
>Mature_135_residues
MDKSIRNTIVAIVAALTFSTASFAANNADDAIAERIKPVGQVYLASDVPVVEEPTGPRTGDQVYNTFCIACHSTGAAGAP
KTQNAADWAPRIAKGMDVLKDHAINGFNAMPARGTCMNCSDDELVAAIDHLIKGL

Specific function: It is unreactive with cytochrome c reductase or oxidase [H]

COG id: COG3245

COG function: function code C; Cytochrome c5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR002323 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14160; Mature: 14160

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKSIRNTIVAIVAALTFSTASFAANNADDAIAERIKPVGQVYLASDVPVVEEPTGPRTG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCH
DQVYNTFCIACHSTGAAGAPKTQNAADWAPRIAKGMDVLKDHAINGFNAMPARGTCMNCS
HHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
DDELVAAIDHLIKGL
CHHHHHHHHHHHHCC
>Mature Secondary Structure
MDKSIRNTIVAIVAALTFSTASFAANNADDAIAERIKPVGQVYLASDVPVVEEPTGPRTG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCH
DQVYNTFCIACHSTGAAGAPKTQNAADWAPRIAKGMDVLKDHAINGFNAMPARGTCMNCS
HHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
DDELVAAIDHLIKGL
CHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2993632 [H]