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The map label for this gene is yybR [H]

Identifier: 209552033

GI number: 209552033

Start: 120219

End: 120626

Strand: Reverse

Name: yybR [H]

Synonym: Rleg2_6178

Alternate gene names: 209552033

Gene position: 120626-120219 (Counterclockwise)

Preceding gene: 209552039

Following gene: 209552022

Centisome position: 39.07

GC content: 60.54

Gene sequence:

>408_bases
ATGAACAAGATTGTAGGCAAGATCGACGGCGAACAGGTGATCGTCGTCATGGGGCAGGTGTTTACGCGGTCTGACTGTCC
GGTCCGCGACGTGCTCGACAATATCGGCGGCAAATGGAACACGCTGATGATCCTTGCTCTTGCGGAAGGGCCGATGCGCT
TCTCCGCCTTGCGCCGGCTGATCCCCGACATTTCACAGCGCATGCTGACGCAGACGCTGCGCGACCTGCAACGCGACGGT
TATATCGACCGGACGGTGTTTCCCACCCAACCGCCAAGCGTCGAATATCGGCTGACGTCGCTGGGGCAATCCTTCCTCGG
CCTCGTGAAGCAACTGGCCGGCTGGTCCGCTGAAAACCACGCCGCCATTCGTACGGCACGGACCGCCTACGACGCCAGAG
AACTTTGA

Upstream 100 bases:

>100_bases
GATATGGTTCCGAAATGAGACCTTCTCTTATTTCGGAATCCTCCGACAGATGTAAAGGAGGCAGTATTTTCTGCGGAAGT
TACCTTAAGGGAACCAAGCC

Downstream 100 bases:

>100_bases
GCCGATGAAACGATTGCATATCGGTATTGCCGGAGCTGGACCTGCGGGCTGGCAGGCACCGAATGCACAGGGTCGGCGGA
ATGAAATGGAGGCCAGCCGA

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MNKIVGKIDGEQVIVVMGQVFTRSDCPVRDVLDNIGGKWNTLMILALAEGPMRFSALRRLIPDISQRMLTQTLRDLQRDG
YIDRTVFPTQPPSVEYRLTSLGQSFLGLVKQLAGWSAENHAAIRTARTAYDAREL

Sequences:

>Translated_135_residues
MNKIVGKIDGEQVIVVMGQVFTRSDCPVRDVLDNIGGKWNTLMILALAEGPMRFSALRRLIPDISQRMLTQTLRDLQRDG
YIDRTVFPTQPPSVEYRLTSLGQSFLGLVKQLAGWSAENHAAIRTARTAYDAREL
>Mature_135_residues
MNKIVGKIDGEQVIVVMGQVFTRSDCPVRDVLDNIGGKWNTLMILALAEGPMRFSALRRLIPDISQRMLTQTLRDLQRDG
YIDRTVFPTQPPSVEYRLTSLGQSFLGLVKQLAGWSAENHAAIRTARTAYDAREL

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=115, Percent_Identity=41.7391304347826, Blast_Score=94, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 15162; Mature: 15162

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKIVGKIDGEQVIVVMGQVFTRSDCPVRDVLDNIGGKWNTLMILALAEGPMRFSALRRL
CCCCCCCCCCCEEEEEECHHHCCCCCCHHHHHHHCCCCCHHEEEEEECCCCHHHHHHHHH
IPDISQRMLTQTLRDLQRDGYIDRTVFPTQPPSVEYRLTSLGQSFLGLVKQLAGWSAENH
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
AAIRTARTAYDAREL
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MNKIVGKIDGEQVIVVMGQVFTRSDCPVRDVLDNIGGKWNTLMILALAEGPMRFSALRRL
CCCCCCCCCCCEEEEEECHHHCCCCCCHHHHHHHCCCCCHHEEEEEECCCCHHHHHHHHH
IPDISQRMLTQTLRDLQRDGYIDRTVFPTQPPSVEYRLTSLGQSFLGLVKQLAGWSAENH
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
AAIRTARTAYDAREL
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]