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The map label for this gene is ydcV [H]

Identifier: 209550737

GI number: 209550737

Start: 3244089

End: 3244868

Strand: Direct

Name: ydcV [H]

Synonym: Rleg2_3161

Alternate gene names: 209550737

Gene position: 3244089-3244868 (Clockwise)

Preceding gene: 209550736

Following gene: 209550738

Centisome position: 71.49

GC content: 63.59

Gene sequence:

>780_bases
ATGACCCTGCGCCTGTTTTCGCCCGTGGTGCTTTTCCTGCTGCTGGTCTTTCTGATCGGCCCGTTCCTGATCATCATCGC
CGCTTCGCTGTCATCAGGCGATACGCTGGCCTTCCCGCCGCAGGGACTGTCGCTGCGCTGGGTCATGAAGGTGTTCACCG
TCGAGAGTTTCCGCGACAGCTTCGCCATGTCGATGTTCCTTGCCGTCTTCGGGACGCTGACAGCCCTCCTCCTCGGCATC
CCGGCCGCCTATGCCCTGTCGCGCTACCGGCTGCCGGCGGCCGAAACCGTCCGCACCGTCGTCTCGCTGCCGATCATCGT
CCCCGGCATCATCGTCGGCCTGGCGCTGCTGCGTTATCTCGTCGTGCCCTTCGGCTTCAACATCACGCTCGCGCTGTTCT
TTGCCCATACCGCCCTGGTGCTGCCCTATGCCGTGCGCGTCGTCTCGGCGAGCCTCGACAATCTGCGTTCGGATATCGAG
GAGGCCGCCGTGCTGCTCGGCTCCTCCAGGCTCGGCGCCTTCTTCCGCGTGGTGATGCCGAATATTCGCGGCGGCATTCT
GGCCGCCTTCATCCTCGGCTTCGTCACCAGCTTCAATCAGGTGCCGGTCTCGCTCTTCCTCTCCGGCCCCGGCGTCCGGA
CGCTGCCGATCGACATGCTGGGCTACATGGAAACCACCTACGATCCGTCCATTGCAGCGCTCTCCGCCCTTCTCGCCTTT
CTTTCCATCGGCATCGTCTTCCTCGCCGAACGCTTCCTGGGATTCTCGCGTTATGTCTGA

Upstream 100 bases:

>100_bases
ATGATTTCGTCTCGGCAAGCGTCATCGCCTTCATCCTGATCATCATGAGCTTTGCCGCCAACATCCTGCTGAAACGCCTT
GCGACGGCGAGGAACCGCCG

Downstream 100 bases:

>100_bases
TGCCTATCTTCAACTCGACAAGCTGACGCTTGCCTATGGCGACACGATTGCGGTCGGGGATCTCGACCTTACGATCGGCA
AAGGTGAACTCGTCGCCCTT

Product: binding-protein-dependent transporters inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MTLRLFSPVVLFLLLVFLIGPFLIIIAASLSSGDTLAFPPQGLSLRWVMKVFTVESFRDSFAMSMFLAVFGTLTALLLGI
PAAYALSRYRLPAAETVRTVVSLPIIVPGIIVGLALLRYLVVPFGFNITLALFFAHTALVLPYAVRVVSASLDNLRSDIE
EAAVLLGSSRLGAFFRVVMPNIRGGILAAFILGFVTSFNQVPVSLFLSGPGVRTLPIDMLGYMETTYDPSIAALSALLAF
LSIGIVFLAERFLGFSRYV

Sequences:

>Translated_259_residues
MTLRLFSPVVLFLLLVFLIGPFLIIIAASLSSGDTLAFPPQGLSLRWVMKVFTVESFRDSFAMSMFLAVFGTLTALLLGI
PAAYALSRYRLPAAETVRTVVSLPIIVPGIIVGLALLRYLVVPFGFNITLALFFAHTALVLPYAVRVVSASLDNLRSDIE
EAAVLLGSSRLGAFFRVVMPNIRGGILAAFILGFVTSFNQVPVSLFLSGPGVRTLPIDMLGYMETTYDPSIAALSALLAF
LSIGIVFLAERFLGFSRYV
>Mature_258_residues
TLRLFSPVVLFLLLVFLIGPFLIIIAASLSSGDTLAFPPQGLSLRWVMKVFTVESFRDSFAMSMFLAVFGTLTALLLGIP
AAYALSRYRLPAAETVRTVVSLPIIVPGIIVGLALLRYLVVPFGFNITLALFFAHTALVLPYAVRVVSASLDNLRSDIEE
AAVLLGSSRLGAFFRVVMPNIRGGILAAFILGFVTSFNQVPVSLFLSGPGVRTLPIDMLGYMETTYDPSIAALSALLAFL
SIGIVFLAERFLGFSRYV

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=231, Percent_Identity=32.9004329004329, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1787081, Length=245, Percent_Identity=29.7959183673469, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1787368, Length=213, Percent_Identity=27.6995305164319, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787571, Length=251, Percent_Identity=26.2948207171315, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788764, Length=163, Percent_Identity=28.8343558282209, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28022; Mature: 27891

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TLRLFSPVVLFLLLVFLIGPFLIIIAASLSSGDTLAFPPQGLSLRWVMKVFTVESFRDS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHH
FAMSMFLAVFGTLTALLLGIPAAYALSRYRLPAAETVRTVVSLPIIVPGIIVGLALLRYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVPFGFNITLALFFAHTALVLPYAVRVVSASLDNLRSDIEEAAVLLGSSRLGAFFRVVMP
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
NIRGGILAAFILGFVTSFNQVPVSLFLSGPGVRTLPIDMLGYMETTYDPSIAALSALLAF
CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
LSIGIVFLAERFLGFSRYV
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]