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The map label for this gene is yibD [H]

Identifier: 209550530

GI number: 209550530

Start: 3013518

End: 3014711

Strand: Direct

Name: yibD [H]

Synonym: Rleg2_2953

Alternate gene names: 209550530

Gene position: 3013518-3014711 (Clockwise)

Preceding gene: 209550529

Following gene: 209550531

Centisome position: 66.41

GC content: 55.7

Gene sequence:

>1194_bases
ATGGAGCTTTCGACCATATCAGGGATTGAGGTGGCCGTCGTGATCCCGGCCTATAATGCCAGCCCTTACCTTGCCCAGAC
GCTCCAATCGGTTGTCGATCAGAGCCACAAGGCATTGGAAATCATCATCGTCGACGATGGCTCAACCGACGAGACGGCGT
CCATCTGTCGCCGCTTCGCAGCCGGAGATCCAAGGTTTAAGCTTTTGTCGACGGCAAACCGCGGCGTCGCTGCCGCCCGC
AATTTCGGAATTGAGGCATCAACCTCAGGCTATATCGCCTTCCTCGATGCTGACGACCTATGGCATCCGACCTATGTCGA
GCGCATGCTTTCGGCTCTCCATCCTCTCCCGGACGCCTGGGGGGCGGTTTATGCTCTTCACCGTTTTATCGATTCCGAGG
GATATTGCACCAAATCCGGTTCGTCGCTGAACGCTCGGGACTCCATCTTAGCGCGTCATCTCGTCTTCCGCTTCGTCGGC
AATGGCAGTGGCTTCATGGTTCGCCGCGCCGTCATCGACAAGATCGGCGGCTACGATCCGCGCTATGCCAGACAGGGGAT
CGGCGGATGCGAGGATTTCGATTTCGAACTCCGTACGGCCGAGCATTTCAAGATTGAGACGGTGCCGCTGGGCCTAGTGG
GATATCGTCTTCACTCCGAGGCCATGTCTGCAGATAAATCACGGATGGCTCGATCACTCCTGGCGGTGAGCGAGCAATGT
ATCGCCCGCAATCCGGACCTGCCGGCTTTTGTCATCAGCTGCGCCCGTGCATCGGCGCATCTTTATGCATTTTCCAAATT
TGCCATTTCGAAAGATTGGCACAGCGCTGGGATCTCGCTGAAGCAGATCTATCATCATAGCCCCATGCTTGCTTCCACCG
TGCTGGCCGAGTTGATCCTCTCAAAAGCCAACCGAGCGGCACGCAGGACATGGTCCAAAGCTTGGCCGGCCAAGGAAAAT
GAGGAAAAGAATGTCAGGAAATTCGAAGAGATAGATCCGCTTTCCCCCTTGGTGGGGGGGTGGTCGCGCTTCAGAACAAA
AGCATTGCTCCAGCGCTTGTCGGAAATCGATCGATCTGGCAATGCAGCTCCGCTGCGACCGCGTCACGGCAGACGTAATG
CCTGGCGGCTAACCGGTCAACATCTCGCTATTACGCTCCGTAATATGATATTTCGACAGAATATCAATAAGTAA

Upstream 100 bases:

>100_bases
CCCTGATCGTCGTCAGCCATCGTCCAGCTGTCGCCCGGCTGATGAAAAACCGGATTGATCTCCGCCCGCCCACATCTACC
TCCAGGCTCGGGTGACGGCG

Downstream 100 bases:

>100_bases
AATCAATGAAACTCGCTAAAAAACCATCACCCCAATAATGACGTGTGACAATACAAGATTTAGCTGCAATCATACCTACG
CACTGTGCAAGCATTTCTAC

Product: family 2 glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MELSTISGIEVAVVIPAYNASPYLAQTLQSVVDQSHKALEIIIVDDGSTDETASICRRFAAGDPRFKLLSTANRGVAAAR
NFGIEASTSGYIAFLDADDLWHPTYVERMLSALHPLPDAWGAVYALHRFIDSEGYCTKSGSSLNARDSILARHLVFRFVG
NGSGFMVRRAVIDKIGGYDPRYARQGIGGCEDFDFELRTAEHFKIETVPLGLVGYRLHSEAMSADKSRMARSLLAVSEQC
IARNPDLPAFVISCARASAHLYAFSKFAISKDWHSAGISLKQIYHHSPMLASTVLAELILSKANRAARRTWSKAWPAKEN
EEKNVRKFEEIDPLSPLVGGWSRFRTKALLQRLSEIDRSGNAAPLRPRHGRRNAWRLTGQHLAITLRNMIFRQNINK

Sequences:

>Translated_397_residues
MELSTISGIEVAVVIPAYNASPYLAQTLQSVVDQSHKALEIIIVDDGSTDETASICRRFAAGDPRFKLLSTANRGVAAAR
NFGIEASTSGYIAFLDADDLWHPTYVERMLSALHPLPDAWGAVYALHRFIDSEGYCTKSGSSLNARDSILARHLVFRFVG
NGSGFMVRRAVIDKIGGYDPRYARQGIGGCEDFDFELRTAEHFKIETVPLGLVGYRLHSEAMSADKSRMARSLLAVSEQC
IARNPDLPAFVISCARASAHLYAFSKFAISKDWHSAGISLKQIYHHSPMLASTVLAELILSKANRAARRTWSKAWPAKEN
EEKNVRKFEEIDPLSPLVGGWSRFRTKALLQRLSEIDRSGNAAPLRPRHGRRNAWRLTGQHLAITLRNMIFRQNINK
>Mature_397_residues
MELSTISGIEVAVVIPAYNASPYLAQTLQSVVDQSHKALEIIIVDDGSTDETASICRRFAAGDPRFKLLSTANRGVAAAR
NFGIEASTSGYIAFLDADDLWHPTYVERMLSALHPLPDAWGAVYALHRFIDSEGYCTKSGSSLNARDSILARHLVFRFVG
NGSGFMVRRAVIDKIGGYDPRYARQGIGGCEDFDFELRTAEHFKIETVPLGLVGYRLHSEAMSADKSRMARSLLAVSEQC
IARNPDLPAFVISCARASAHLYAFSKFAISKDWHSAGISLKQIYHHSPMLASTVLAELILSKANRAARRTWSKAWPAKEN
EEKNVRKFEEIDPLSPLVGGWSRFRTKALLQRLSEIDRSGNAAPLRPRHGRRNAWRLTGQHLAITLRNMIFRQNINK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=102, Percent_Identity=43.1372549019608, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787259, Length=91, Percent_Identity=34.0659340659341, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 44143; Mature: 44143

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELSTISGIEVAVVIPAYNASPYLAQTLQSVVDQSHKALEIIIVDDGSTDETASICRRFA
CCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHH
AGDPRFKLLSTANRGVAAARNFGIEASTSGYIAFLDADDLWHPTYVERMLSALHPLPDAW
CCCCCEEEEHHCCCCHHHHHHCCCEECCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCHH
GAVYALHRFIDSEGYCTKSGSSLNARDSILARHLVFRFVGNGSGFMVRRAVIDKIGGYDP
HHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
RYARQGIGGCEDFDFELRTAEHFKIETVPLGLVGYRLHSEAMSADKSRMARSLLAVSEQC
HHHHHCCCCCCCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IARNPDLPAFVISCARASAHLYAFSKFAISKDWHSAGISLKQIYHHSPMLASTVLAELIL
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHCCCHHHHHHHHHHHH
SKANRAARRTWSKAWPAKENEEKNVRKFEEIDPLSPLVGGWSRFRTKALLQRLSEIDRSG
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHCCC
NAAPLRPRHGRRNAWRLTGQHLAITLRNMIFRQNINK
CCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MELSTISGIEVAVVIPAYNASPYLAQTLQSVVDQSHKALEIIIVDDGSTDETASICRRFA
CCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHH
AGDPRFKLLSTANRGVAAARNFGIEASTSGYIAFLDADDLWHPTYVERMLSALHPLPDAW
CCCCCEEEEHHCCCCHHHHHHCCCEECCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCHH
GAVYALHRFIDSEGYCTKSGSSLNARDSILARHLVFRFVGNGSGFMVRRAVIDKIGGYDP
HHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
RYARQGIGGCEDFDFELRTAEHFKIETVPLGLVGYRLHSEAMSADKSRMARSLLAVSEQC
HHHHHCCCCCCCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IARNPDLPAFVISCARASAHLYAFSKFAISKDWHSAGISLKQIYHHSPMLASTVLAELIL
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHCCCHHHHHHHHHHHH
SKANRAARRTWSKAWPAKENEEKNVRKFEEIDPLSPLVGGWSRFRTKALLQRLSEIDRSG
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHCCC
NAAPLRPRHGRRNAWRLTGQHLAITLRNMIFRQNINK
CCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2647748 [H]