Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
---|---|
Accession | NC_011369 |
Length | 4,537,948 |
Click here to switch to the map view.
The map label for this gene is engD [H]
Identifier: 209550350
GI number: 209550350
Start: 2815643
End: 2816746
Strand: Direct
Name: engD [H]
Synonym: Rleg2_2771
Alternate gene names: 209550350
Gene position: 2815643-2816746 (Clockwise)
Preceding gene: 209550348
Following gene: 209550352
Centisome position: 62.05
GC content: 62.5
Gene sequence:
>1104_bases ATGGGCTTCAAATGCGGCATCGTCGGTCTGCCGAACGTCGGCAAATCGACCCTCTTCAACGCGCTCACCAAGACGGCGGC CGCACAGGCGGCGAACTATCCCTTCTGCACCATCGAGCCGAACACCGGTGAAGTCGCCGTGCCCGATCCGCGCATGCGCA AGCTTGCCGACATCGCCAAGTCGAAAGAACTGATCCCGACCCGCATCTCCTTCGTCGACATCGCCGGCCTGGTGCGCGGC GCCTCGAAGGGTGAAGGCCTCGGCAACCAGTTCCTTGCCAATATCCGCGAAGTCGACGCCATCGTGCATGTGCTGCGTTG TTTTGAAGACAGCGACATCACCCATGTCGAGGGCCGCATCAATCCCGTCGCCGATGCCGAGACCATCGAGACCGAGCTGA TGCTCGCCGACCTCGAAAGCCTCGAGCGCCGCACCGAGCAGACGCGCAAGCGCGCCACCAGCAAGGACAAGGAATCGATG GCGATGCTGCCGATCATGGAAGCGTCGCTGAAATTGCTCAACGAAGGCAAGCCGGTGCGCACCCTGCTGTCGACGCTGGA CGCCGAGGAAATCGCCATCCTCAAGGGCCTCAATCTCCTGACCTCGCATCCGGTGCTCTATGTCTGCAACGTCGCCGAGG CCGAGGCTTCGACCGGCAATGAATTCACCGAAGCCGTCGCCGTCATGGCTCGGGAACAGGGTGCTGAAACCGTCGTCATC TCGGCGGCGATCGAGGCCGAGGTCGCTCAGCTTCCCGAGGATGAGGCCAAGGAATTCCTCTCCGCCCTCGACCTTGACGA GGCAGGCCTCGACCGGCTGATCCGCGCCGGCTACAAGCTGCTCCACCTCATCACCTATTTCACCGTCGGCCCGAAGGAAA CGCGCGCCTGGACGATCGAGCGCGGCACCAAGGCGCCGCAGGCCGCCGGCGTCATCCATTCGGATTTCGAGCGCGGCTTC ATCCGCGCCAACACCATCGCCTATGACGATTACATCAAGTACAACGGCGAAGTCGGCGCCAAGGATGCCGGCAAGGCGCG TGACGAAGGCAAGGAATACGTCGTCCAGGACGGCGACGTTATCCACTTCCGTTTCAATACCTGA
Upstream 100 bases:
>100_bases TGAGCAAGTGAGCAACGCTAAAAGCTCGCTAAGACTTGACCACATTGCTCCTTTATCCCATAGGCACCAGCAAGAAATTC AAGAACAGCAGGTTTTAGCC
Downstream 100 bases:
>100_bases TGCGAACAGGCTGCCGCCTCAACCCGGCGGCAGCCTGTTTGCAATTGCCGGCGGCAGGGCGCGCAGCACCAGCCGCCGAA GCGGCATCCAACCGGTGCCG
Product: GTP-dependent nucleic acid-binding protein EngD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 367; Mature: 366
Protein sequence:
>367_residues MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMRKLADIAKSKELIPTRISFVDIAGLVRG ASKGEGLGNQFLANIREVDAIVHVLRCFEDSDITHVEGRINPVADAETIETELMLADLESLERRTEQTRKRATSKDKESM AMLPIMEASLKLLNEGKPVRTLLSTLDAEEIAILKGLNLLTSHPVLYVCNVAEAEASTGNEFTEAVAVMAREQGAETVVI SAAIEAEVAQLPEDEAKEFLSALDLDEAGLDRLIRAGYKLLHLITYFTVGPKETRAWTIERGTKAPQAAGVIHSDFERGF IRANTIAYDDYIKYNGEVGAKDAGKARDEGKEYVVQDGDVIHFRFNT
Sequences:
>Translated_367_residues MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMRKLADIAKSKELIPTRISFVDIAGLVRG ASKGEGLGNQFLANIREVDAIVHVLRCFEDSDITHVEGRINPVADAETIETELMLADLESLERRTEQTRKRATSKDKESM AMLPIMEASLKLLNEGKPVRTLLSTLDAEEIAILKGLNLLTSHPVLYVCNVAEAEASTGNEFTEAVAVMAREQGAETVVI SAAIEAEVAQLPEDEAKEFLSALDLDEAGLDRLIRAGYKLLHLITYFTVGPKETRAWTIERGTKAPQAAGVIHSDFERGF IRANTIAYDDYIKYNGEVGAKDAGKARDEGKEYVVQDGDVIHFRFNT >Mature_366_residues GFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMRKLADIAKSKELIPTRISFVDIAGLVRGA SKGEGLGNQFLANIREVDAIVHVLRCFEDSDITHVEGRINPVADAETIETELMLADLESLERRTEQTRKRATSKDKESMA MLPIMEASLKLLNEGKPVRTLLSTLDAEEIAILKGLNLLTSHPVLYVCNVAEAEASTGNEFTEAVAVMAREQGAETVVIS AAIEAEVAQLPEDEAKEFLSALDLDEAGLDRLIRAGYKLLHLITYFTVGPKETRAWTIERGTKAPQAAGVIHSDFERGFI RANTIAYDDYIKYNGEVGAKDAGKARDEGKEYVVQDGDVIHFRFNT
Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]
COG id: COG0012
COG function: function code J; Predicted GTPase, probable translation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI58761500, Length=370, Percent_Identity=43.2432432432432, Blast_Score=295, Evalue=4e-80, Organism=Homo sapiens, GI58761502, Length=199, Percent_Identity=39.1959798994975, Blast_Score=152, Evalue=4e-37, Organism=Escherichia coli, GI1787454, Length=366, Percent_Identity=56.8306010928962, Blast_Score=419, Evalue=1e-118, Organism=Escherichia coli, GI1789574, Length=130, Percent_Identity=33.0769230769231, Blast_Score=65, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17509631, Length=368, Percent_Identity=42.6630434782609, Blast_Score=290, Evalue=1e-78, Organism=Saccharomyces cerevisiae, GI6319499, Length=374, Percent_Identity=40.3743315508021, Blast_Score=267, Evalue=2e-72, Organism=Saccharomyces cerevisiae, GI6321773, Length=379, Percent_Identity=36.9393139841689, Blast_Score=237, Evalue=2e-63, Organism=Saccharomyces cerevisiae, GI6321649, Length=308, Percent_Identity=28.2467532467532, Blast_Score=88, Evalue=2e-18, Organism=Drosophila melanogaster, GI24640873, Length=372, Percent_Identity=41.6666666666667, Blast_Score=283, Evalue=1e-76, Organism=Drosophila melanogaster, GI24640877, Length=372, Percent_Identity=41.6666666666667, Blast_Score=283, Evalue=1e-76, Organism=Drosophila melanogaster, GI24640875, Length=372, Percent_Identity=41.6666666666667, Blast_Score=283, Evalue=1e-76, Organism=Drosophila melanogaster, GI24640879, Length=333, Percent_Identity=39.039039039039, Blast_Score=229, Evalue=2e-60,
Paralogues:
None
Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012675 - InterPro: IPR004396 - InterPro: IPR013029 - InterPro: IPR006073 - InterPro: IPR002917 - InterPro: IPR012676 - InterPro: IPR023192 [H]
Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]
EC number: NA
Molecular weight: Translated: 40027; Mature: 39896
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: PS00443 GATASE_TYPE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMRKLADIAK CCEEECEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEECCCHHHHHHHHHHH SKELIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDSDITHVEGRI CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC NPVADAETIETELMLADLESLERRTEQTRKRATSKDKESMAMLPIMEASLKLLNEGKPVR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHH TLLSTLDAEEIAILKGLNLLTSHPVLYVCNVAEAEASTGNEFTEAVAVMAREQGAETVVI HHHHHCCHHHHHHHHCCHHHHCCCEEEEEECHHHCCCCCHHHHHHHHHHHHHCCCCEEEE SAAIEAEVAQLPEDEAKEFLSALDLDEAGLDRLIRAGYKLLHLITYFTVGPKETRAWTIE EHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE RGTKAPQAAGVIHSDFERGFIRANTIAYDDYIKYNGEVGAKDAGKARDEGKEYVVQDGDV CCCCCCHHHCCHHHHHHCCCEEECEEEECCCEEECCCCCCCCCCCCHHCCCEEEEECCCE IHFRFNT EEEEECC >Mature Secondary Structure GFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMRKLADIAK CEEECEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEECCCHHHHHHHHHHH SKELIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDSDITHVEGRI CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC NPVADAETIETELMLADLESLERRTEQTRKRATSKDKESMAMLPIMEASLKLLNEGKPVR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHH TLLSTLDAEEIAILKGLNLLTSHPVLYVCNVAEAEASTGNEFTEAVAVMAREQGAETVVI HHHHHCCHHHHHHHHCCHHHHCCCEEEEEECHHHCCCCCHHHHHHHHHHHHHCCCCEEEE SAAIEAEVAQLPEDEAKEFLSALDLDEAGLDRLIRAGYKLLHLITYFTVGPKETRAWTIE EHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE RGTKAPQAAGVIHSDFERGFIRANTIAYDDYIKYNGEVGAKDAGKARDEGKEYVVQDGDV CCCCCCHHHCCHHHHHHCCCEEECEEEECCCEEECCCCCCCCCCCCHHCCCEEEEECCCE IHFRFNT EEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA